Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0390 ATGGCGGAGCCTCCCACCAGTCCCGCCGCCGGCAGCCACGAGAGCGGCGGCGAGCAGAGCCCCAACACCGGCGGCGTTCGCGAGCAGGACCGCTACCTCCCGATCGCTAACATAAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCTAAGGATGCTAAGGATACCGTCCAGGAATGCGTCTCCGAATTTATTAGCTTCATCACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCGATGGCGACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAGTCTGCTAAAAGAGATGCAGTTGGATCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATTAACACTCAAGTAATACTCTCTCTTCTCTCAACTTGTCAACACGTTATTCAGGAATACCCTTCATTTTATTGCTAA 549 50.64 MAEPPTSPAAGSHESGGEQSPNTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRELECDAKGSSRGGDESAKRDAVGSLPGQNSQQYMQPGALTYINTQVILSLLSTCQHVIQEYPSFYC 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3218497 3223996 + Tan0006938.4 Tan04g0390 748794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0390 182 Gene3D Histone, subunit A 21 152 IPR009072 GO:0046982(InterPro)
Tan04g0390 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 143 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan04g0390 182 FunFam Nuclear transcription factor Y subunit B-3 21 146 - -
Tan04g0390 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Tan04g0390 182 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Tan04g0390 182 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Tan04g0390 182 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Tan04g0390 182 MobiDBLite consensus disorder prediction 1 29 - -
Tan04g0390 182 MobiDBLite consensus disorder prediction 122 144 - -
Tan04g0390 182 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g0390 182 SUPERFAMILY Histone-fold 29 131 IPR009072 GO:0046982(InterPro)
Tan04g0390 182 MobiDBLite consensus disorder prediction 12 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0390 K08065 - - csv:101223123 300.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0388 Tan-Chr4:3218497 Tan04g0390 Tan-Chr4:3218497 2.30E-89 dispersed
Tan04g0390 Tan-Chr4:3218497 Tan08g1925 Tan-Chr8:71507496 1.10E-60 dispersed
Tan04g0389 Tan-Chr4:3218497 Tan04g0390 Tan-Chr4:3218497 8.90E-90 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g452 . . . Bda15g00184 Bpe04g01683 Bpe15g01076 . Bma08g01142 . . . . Car04g01334 . . . . . . . . . . . . . . . . . . Cone1ag1336 Cone5ag0323 . . . . . . Blo13g00735 . Bda14g00336 Bda15g00376 Bpe04g01683 . . Bma08g00961 Sed07g2409 . . . . . . . . Bhi07g01026 Tan04g0390 Cmetu10g1537 . Hepe01g0881 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1846 . 39 144 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 3.2e-47 186.0
Tan05g0985 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.0e-37 154.5
Tan01g1846 . 8 166 CCAAT-HAP3 Transcription Factor Family AT1G21970 59.7 2.0e-49 193.4
Tan05g0985 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 5.2e-57 218.0
Tan01g1853 . 33 183 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.9 1.0e-52 203.8
Tan01g1324 . 27 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 8.3e-47 184.1
Tan08g1924 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.0e-45 177.9
Tan08g1925 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.0e-45 177.9
Tan08g1926 . 22 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.4 6.6e-44 174.5
Tan04g0387 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan04g0388 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan04g0389 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan04g0390 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.9e-43 172.9
Tan06g0851 . 40 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.6 4.1e-38 155.2
Tan04g0387 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan04g0388 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan04g0389 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan04g0390 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.0 7.7e-50 194.1
Tan08g1926 . 1 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 75.2 1.1e-48 190.3
Tan08g1924 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.2e-48 188.3
Tan08g1925 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.2e-48 188.3
Tan01g1853 . 33 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.1 1.8e-43 172.9
Tan05g0985 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.0e-42 169.5
Tan01g1324 . 13 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.1 1.3e-41 166.8
Tan06g0851 . 34 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.0e-38 157.1
Tan06g0851 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.7
Tan01g1853 . 49 148 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 4.4e-40 161.8
Tan05g0985 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 8.3e-39 157.5
Tan06g2651 . 38 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.5 1.6e-37 153.3
Tan01g1324 . 30 125 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 2.0e-37 152.9
Tan08g1924 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.3e-36 150.2
Tan08g1925 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.3e-36 150.2
Tan08g1924 . 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.6 9.5e-65 243.8
Tan08g1925 . 1 159 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.9 2.1e-59 226.1
Tan04g0387 . 10 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.3e-57 218.4
Tan04g0388 . 10 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 3.6e-56 215.3
Tan04g0389 . 10 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 3.6e-56 215.3
Tan04g0390 . 10 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 3.6e-56 215.3
Tan08g1926 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.2 1.9e-49 193.0
Tan05g0985 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.9e-44 176.4
Tan01g1853 . 41 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 2.7e-43 172.6
Tan01g1324 . 29 122 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.8 2.8e-40 162.5
Tan06g0851 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.9 4.9e-37 151.8
Tan01g1324 . 17 131 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 3.0e-44 176.0
Tan05g0985 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.2e-44 175.3
Tan08g1924 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 8.8e-44 174.5
Tan08g1925 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 8.8e-44 174.5
Tan01g1853 . 53 148 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 1.4e-41 167.2
Tan08g1926 . 7 115 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.2 4.1e-41 165.6
Tan04g0387 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan04g0388 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan04g0389 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan04g0390 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 1.7e-39 160.2
Tan06g0851 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 62.4 5.0e-39 158.7
Tan05g0985 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 7.8e-52 201.1
Tan01g1853 . 33 151 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.7 1.6e-49 193.4
Tan01g1324 . 25 130 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.2e-44 177.2
Tan04g0387 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan04g0388 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan04g0389 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan04g0390 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 7.8e-44 174.5
Tan08g1924 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.0e-43 174.1
Tan08g1925 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.0e-43 174.1
Tan08g1926 . 11 116 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.5 3.3e-42 169.1
Tan06g0851 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 7.5e-39 157.9
Tan08g1924 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.9 8.5e-61 230.7
Tan08g1925 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 3.6e-59 225.3
Tan04g0387 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.1 9.7e-57 217.2
Tan04g0388 . 12 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 8.2e-56 214.2
Tan04g0389 . 12 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 8.2e-56 214.2
Tan04g0390 . 12 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.7 8.2e-56 214.2
Tan08g1926 . 12 116 CCAAT-HAP3 Transcription Factor Family AT3G53340 88.8 1.3e-48 190.3
Tan05g0985 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 3.8e-45 178.7
Tan01g1853 . 41 188 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.0 1.5e-44 176.8
Tan01g1324 . 18 122 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 9.8e-41 164.1
Tan06g0851 . 20 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 60.9 7.7e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27158 PF00808 CBFD_NFYB_HMF 6.30E-28 CL0012 Tan TF