Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0396 | ATGGCTTACGTGGCCAAATGTACGAACTCTCCACCAACGCCGATCACTCTCCCTAACCCCTTATCTTACTCCCCATCCTCTTCCTCCGCCGCCGCCGCCACCACCAATTTTGCTTCGCCGCCCACTTCTCAGCCGTCGTCTCCGCCGCCTGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGTCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAGTTCACCATTGCCCATAGAGTCTTTGGAGCTAGCAATATCATCAAGTTTTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTGTACGGTAGCGCGGGTGCGATTTGCCAGTTGCAAAAGCAAGTGAGCGAGTTGCAAGCCCAACTAGCCAAGGCTAGGGCGGAGGTAGCCAATATGCAGCAGCAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCGGAGCCCGTTTGGCCGCCGCAACTCGTCGACACCGCCTGCTTCCTCGACGACGCTGCCCTTAGCTCGCCGTGGGAGCCGCTCTGGACGTGA | 624 | 56.89 | MAYVAKCTNSPPTPITLPNPLSYSPSSSSAAAATTNFASPPTSQPSSPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLVDTACFLDDAALSSPWEPLWT | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3287048 | 3288849 | + | Tan0014865.1 | Tan04g0396 | 748800 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0396 | 207 | Coils | Coil | 135 | 169 | - | - | |
Tan04g0396 | 207 | ProSiteProfiles | LOB domain profile. | 55 | 156 | IPR004883 | - | |
Tan04g0396 | 207 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 55 | 165 | - | - | |
Tan04g0396 | 207 | Pfam | Lateral organ boundaries (LOB) domain | 56 | 153 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2596 | Tan-Chr1:39333484 | Tan04g0396 | Tan-Chr4:3287048 | 6.20E-47 | dispersed | |
Tan04g0396 | Tan-Chr4:3287048 | Tan11g0811 | Tan-Chr11:6780495 | 6.10E-42 | dispersed | |
Tan04g0396 | Tan-Chr4:3287048 | Tan05g0284 | Tan-Chr5:2133005 | 3.90E-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27159 | PF03195 | LOB | 1.80E-40 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0396 | - | - | - | 0.0 |