Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0396 ATGGCTTACGTGGCCAAATGTACGAACTCTCCACCAACGCCGATCACTCTCCCTAACCCCTTATCTTACTCCCCATCCTCTTCCTCCGCCGCCGCCGCCACCACCAATTTTGCTTCGCCGCCCACTTCTCAGCCGTCGTCTCCGCCGCCTGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGTCGCCGCTGCGTCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAGTTCACCATTGCCCATAGAGTCTTTGGAGCTAGCAATATCATCAAGTTTTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTGTACGGTAGCGCGGGTGCGATTTGCCAGTTGCAAAAGCAAGTGAGCGAGTTGCAAGCCCAACTAGCCAAGGCTAGGGCGGAGGTAGCCAATATGCAGCAGCAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCGGAGCCCGTTTGGCCGCCGCAACTCGTCGACACCGCCTGCTTCCTCGACGACGCTGCCCTTAGCTCGCCGTGGGAGCCGCTCTGGACGTGA 624 56.89 MAYVAKCTNSPPTPITLPNPLSYSPSSSSAAAATTNFASPPTSQPSSPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLVDTACFLDDAALSSPWEPLWT 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3287048 3288849 + Tan0014865.1 Tan04g0396 748800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0396 207 Coils Coil 135 169 - -
Tan04g0396 207 ProSiteProfiles LOB domain profile. 55 156 IPR004883 -
Tan04g0396 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 55 165 - -
Tan04g0396 207 Pfam Lateral organ boundaries (LOB) domain 56 153 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2596 Tan-Chr1:39333484 Tan04g0396 Tan-Chr4:3287048 6.20E-47 dispersed
Tan04g0396 Tan-Chr4:3287048 Tan11g0811 Tan-Chr11:6780495 6.10E-42 dispersed
Tan04g0396 Tan-Chr4:3287048 Tan05g0284 Tan-Chr5:2133005 3.90E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27159 PF03195 LOB 1.80E-40 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0396 - - - 0.0