Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0422 ATGTCAAATTCAGAAACTGGCAACAACGCCAATGGCGCCACTATCGACACCCACAAGAATCAGCCCTCTTCCAACGGAGCCCTCGTCGTCAAGAAGCCCCCCTCCAAGGACCGACACAGCAAGGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGTGCCGCTCGCGTATTCCAGCTGACTCGAGAACTCGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATTATTGCCGCTACCGGCACCGGCACCACTCCTGCTAATTTCTCCTCCGTCTCTCTCTCCGTTAGAGGAAATGGCGGCTGCGCCTCTCTCTCTTCCCCTTCTTCCACTACTTCCACTCTCTCCCTCTCTCGCCCTCAGGCTCTCTCCAGTCCCACGCCGTTTATTCTAGGCAAGCGCGTCAGGTCCGACGACGACGGCGGTAAGGACGATGGGTTGGGAGTGGGTCCGGCGGTTGGGTCCATAGTGGGTCCGACGGGTCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGGCAGGTGTGGAGCTTTGCCGCGGCGGCGGCGGCTCCGTCGGAGATGGTGGTTCAACAGGGGATTTCTCAGCAGGCATCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCGAGAGTGGGGAACTACCTTCCCGGTCATCTGAATTTACTGGCGTCGTTGTCCGGCGGCGGTGGTTCCGGCCGACGGGAAGATGACCCTCGCTGA 771 61.35 MSNSETGNNANGATIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGCASLSSPSSTTSTLSLSRPQALSSPTPFILGKRVRSDDDGGKDDGLGVGPAVGSIVGPTGPSGYWAIPARPDYGQVWSFAAAAAAPSEMVVQQGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3533260 3536405 + Tan0017801.1 Tan04g0422 748826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0422 256 Pfam TCP family transcription factor 35 116 IPR017887 -
Tan04g0422 256 MobiDBLite consensus disorder prediction 141 164 - -
Tan04g0422 256 ProSiteProfiles TCP domain profile. 35 89 IPR017887 -
Tan04g0422 256 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 153 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan04g0422 256 MobiDBLite consensus disorder prediction 1 28 - -
Tan04g0422 256 MobiDBLite consensus disorder prediction 32 46 - -
Tan04g0422 256 MobiDBLite consensus disorder prediction 1 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0422 K16221 - - csv:101206050 381.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0422 Tan-Chr4:3533260 Tan09g2130 Tan-Chr9:71602131 1.00E-30 dispersed
Tan11g1492 Tan-Chr11:13710718 Tan04g0422 Tan-Chr4:3533260 1.20E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0422 . 33 256 TCP Transcription Factor Family AT5G23280 61.9 4.0e-64 242.3
Tan11g1492 . 43 270 TCP Transcription Factor Family AT5G23280 60.6 7.5e-63 238.0
Tan06g2129 . 69 406 TCP Transcription Factor Family AT2G45680 50.3 3.8e-68 256.1
Tan05g3331 . 47 145 TCP Transcription Factor Family AT3G47620 83.8 6.7e-39 159.5
Tan04g0013 . 108 239 TCP Transcription Factor Family AT3G47620 58.9 4.8e-37 153.3
Tan04g0013 . 108 199 TCP Transcription Factor Family AT1G69690 83.7 2.7e-36 150.2
Tan07g0080 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan07g0081 . 41 301 TCP Transcription Factor Family AT3G27010 58.2 8.9e-61 231.5
Tan06g1482 . 30 255 TCP Transcription Factor Family AT3G27010 52.2 5.8e-52 202.2
Tan04g0422 . 10 254 TCP Transcription Factor Family AT5G08330 56.0 5.2e-61 231.9
Tan11g1492 . 40 269 TCP Transcription Factor Family AT5G08330 59.9 7.5e-60 228.0
Tan04g1920 . 39 132 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan04g1921 . 37 130 TCP Transcription Factor Family AT3G02150 77.1 2.9e-36 150.2
Tan02g0149 . 31 193 TCP Transcription Factor Family AT2G31070 55.6 7.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27160 PF03634 TCP 6.30E-33 No_clan Tan TF