Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0422 ATGTCAAATTCAGAAACTGGCAACAACGCCAATGGCGCCACTATCGACACCCACAAGAATCAGCCCTCTTCCAACGGAGCCCTCGTCGTCAAGAAGCCCCCCTCCAAGGACCGACACAGCAAGGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGTGCCGCTCGCGTATTCCAGCTGACTCGAGAACTCGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATTATTGCCGCTACCGGCACCGGCACCACTCCTGCTAATTTCTCCTCCGTCTCTCTCTCCGTTAGAGGAAATGGCGGCTGCGCCTCTCTCTCTTCCCCTTCTTCCACTACTTCCACTCTCTCCCTCTCTCGCCCTCAGGCTCTCTCCAGTCCCACGCCGTTTATTCTAGGCAAGCGCGTCAGGTCCGACGACGACGGCGGTAAGGACGATGGGTTGGGAGTGGGTCCGGCGGTTGGGTCCATAGTGGGTCCGACGGGTCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGGCAGGTGTGGAGCTTTGCCGCGGCGGCGGCGGCTCCGTCGGAGATGGTGGTTCAACAGGGGATTTCTCAGCAGGCATCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCGTCGGCGGCGAGAGTGGGGAACTACCTTCCCGGTCATCTGAATTTACTGGCGTCGTTGTCCGGCGGCGGTGGTTCCGGCCGACGGGAAGATGACCCTCGCTGA 771 61.35 MSNSETGNNANGATIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGCASLSSPSSTTSTLSLSRPQALSSPTPFILGKRVRSDDDGGKDDGLGVGPAVGSIVGPTGPSGYWAIPARPDYGQVWSFAAAAAAPSEMVVQQGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3533260 3536405 + Tan0017801.1 Tan04g0422 748826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0422 256 Pfam TCP family transcription factor 35 116 IPR017887 -
Tan04g0422 256 MobiDBLite consensus disorder prediction 141 164 - -
Tan04g0422 256 ProSiteProfiles TCP domain profile. 35 89 IPR017887 -
Tan04g0422 256 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 153 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Tan04g0422 256 MobiDBLite consensus disorder prediction 1 28 - -
Tan04g0422 256 MobiDBLite consensus disorder prediction 32 46 - -
Tan04g0422 256 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0422 Tan-Chr4:3533260 Tan09g2130 Tan-Chr9:71602131 1.00E-30 dispersed
Tan11g1492 Tan-Chr11:13710718 Tan04g0422 Tan-Chr4:3533260 1.20E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27160 PF03634 TCP 6.30E-33 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0422 K16221 - csv:101206050 381.719