Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g0424 | ATGTCTCGGAAATCCCAGGTGATGATTTCATTGCAATCCACTAAATCCATGCCAGTTAATTCTCGGTTCATGATCACGCAAGCTGCTGAAGCTTTGGAAGAGCCTTATAATCGGAATGTGAAAAACATGGAAGCTAGTTCGTTAGTTGATGGTGAAAATGGTGCCTCTGGAGATGACGCCGTCAATCGACTTCAATACAGTGTGAACAATATTGACGAGCTGAATGAGGACTCACCATATAATTGCAATATTATAACAGTGGAAGAAAGACCTACCATGGATGATGGAGAAGACGGTTTTATGTCTTTACCTTCACCTTCAATATCGTCTTCACATAGTGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTAAAGATACTGTCAACTACAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTTCCGCAAATCCAGATATCCTTGATGGTGTTGACGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTGTTGTATGATCTTGAATACAGATATAATCAAGATATTATATATACTAAAGCAGGGCCAGTCCTGGTTGCCATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAATGATTACATTGAAGCATACAAGAGCAAAGCAGTTCAGAGTCCGCACGTTTATGCCATTACAGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCCAAGATAGCAATGCAATACTTGGCAGCCCTTGGCGGTGGAAGTGGAATAGAAAATGAGATATTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGCTTTGGAAAATTGATAGAAATCCATTTTAGTGAAACTGGGAAAATTTCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGCACGGAGGGAGAAAGGTCATACCACATCTTTTATCAACTTTGTAGTGGGGCTCCAGCTGCACTTAAAGAGAGGCTGAACTTGAGAAGAGCGGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTTCAATAAGTAGAGTAAATGACGCTGAAGAGTTTCGTATAGTCATGGAAGCACTAGACGTTGTCCATATCAGCAAACAAGATCAGCACAGTGTATTTGCAATGCTTGCTGCTGTGCTGTGGCTGGGAAATGTTTCCTTTAGTGTGATAGACAATGAGAATCATGTGGAGGCCGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAATGTGAGATTGAGGAGCTTAAACTAGCTTTATCAACTAGAAAAATGAGAGTTGGGAACGACAGCATTGTCCAGAAGCTTACTTTACCTCAGGCAATTGACACTAGAGATGCTTTGGCAAAGTCAATTTACGCTTGTTTGTTTGAGTGGCTGGTTGAACAAATTAACAAATCTCTTGCTGTAGGCAAACGACGCACTGGCAGATCCATCAGCATTCTTGATATCTATGGTTTTGAATCATTTGAGAGGAATAGTTTTGAACAATTCTGCATTAACTATGCCAATGAGAGACTACAACAACATTTCAATCGTCATTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGATTGGGCAAAAGTTGATTTTGACGACAACCAAGACTGTCTCTGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTGGACGAGGAGTCTACTTTTCCAAATGGCACAGATCTGACCTTTGCGAACAAGCTTAAGCAGCATTTGGGTCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTTACTGTCCGTCATTATGCAGGAGAGGTCACTTATGGCACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCATGCTCATGCCATCTCCCTCAGATTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATTGGTGGGACTTTACACAAATCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCTCCGTCTTGAAAATACAACACCTCATTTCATCCGTTGCATCAAGCCCAACAATCTTCAGTCTCCCAGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGGATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAGCATTTCATCGCAGGATCCACTAAGTGTCTCAGTCGCGATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAGGATACAAGAAACCGCACCCTCCACGGGATTCTCTGTGTTCAAAGCTGTTATAGAGGGCACCTGGCTCGGTGCCACCTCAAAGAGCTGAAGAGAGGGATTTCTGTACTTCAGTCATTTGCACGTGGGGAGAAAACCAGAAAAGAATATGCAATCTTGATACGAAGGCACAAGGCTGCTATTTCTATTCAAAAGTGTCTCAAAGCCAGAATTGCTAGAAAACGTTTGGAGAAAGTCTGTGATGCATCACTTGTGATACAATCAGTTATCCGTGGCTGGTTGGTCAGGAGATGCTCAGGAGATATAGGATTAATGAAGCCTGGTGGCCTGACGGCAAATGGGTCAGGTGAGGTGCTTGTCAAGTCATCATTCCTTACAGAATTACAACGCCGCGTTCTGAAGGCAGAGGCTGCTTTGAGAGAGAAAGAAGAGGAAAACGACATTCTCCATCAGCGCCTGCAACAGTACGAGAACCGTTGGTCAGAGTATGAACTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTTTCCATTGCTAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGACGCATCAGTCAATGCAAGTGATGACAGAGGATACAGTTGGGAACTGGGTAGCAACAACACAGCTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGTTTGGCTGAGGAATTTGAACAAAGAAGTCAAGTCTTCGGGGACGATGCAAAGTTCTTGGTAGAAGTAAAATCTGGTCAAGTTGAGGCAAGTCTTGACCCTGATAGGGAACTCAGAAGGTTGAAGCAAATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGACTGCGCGAAACAAAAGTGATTTTGAATAAGCTTGGGAATGAAGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGAAGGAGGAACAGCACAAGGTATAGTTAA | 3528 | 41.64 | MSRKSQVMISLQSTKSMPVNSRFMITQAAEALEEPYNRNVKNMEASSLVDGENGASGDDAVNRLQYSVNNIDELNEDSPYNCNIITVEERPTMDDGEDGFMSLPSPSISSSHSERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTTGTESVVSLTDGKVLKVKAENLISANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIEAYKSKAVQSPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIENEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGAPAALKERLNLRRAEEYKYLSQSNCFSISRVNDAEEFRIVMEALDVVHISKQDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLPQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLCLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPNSSFRGERGKAFTVRHYAGEVTYGTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNLQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESISSQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCYRGHLARCHLKELKRGISVLQSFARGEKTRKEYAILIRRHKAAISIQKCLKARIARKRLEKVCDASLVIQSVIRGWLVRRCSGDIGLMKPGGLTANGSGEVLVKSSFLTELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWELGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDRVKKKWWGRRNSTRYS | 1175 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3559476 | 3572195 | + | Tan0006618.1 | Tan04g0424 | 748828 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g0424 | 1175 | ProSiteProfiles | Myosin motor domain profile. | 179 | 851 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | ProSiteProfiles | IQ motif profile. | 855 | 881 | - | - | |
| Tan04g0424 | 1175 | PANTHER | MYOSIN | 131 | 1165 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Tan04g0424 | 1175 | ProSiteProfiles | IQ motif profile. | 902 | 929 | - | - | |
| Tan04g0424 | 1175 | Pfam | IQ calmodulin-binding motif | 928 | 943 | IPR000048 | GO:0005515(InterPro) | |
| Tan04g0424 | 1175 | Pfam | IQ calmodulin-binding motif | 857 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Tan04g0424 | 1175 | Gene3D | - | 785 | 852 | - | - | |
| Tan04g0424 | 1175 | ProSiteProfiles | IQ motif profile. | 876 | 905 | - | - | |
| Tan04g0424 | 1175 | Gene3D | Kinesin motor domain | 178 | 784 | IPR036961 | - | |
| Tan04g0424 | 1175 | PRINTS | Myosin heavy chain signature | 305 | 332 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | PRINTS | Myosin heavy chain signature | 209 | 228 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | PRINTS | Myosin heavy chain signature | 537 | 565 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | PRINTS | Myosin heavy chain signature | 263 | 288 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | PRINTS | Myosin heavy chain signature | 590 | 618 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | SMART | iq_5 | 924 | 946 | IPR000048 | GO:0005515(InterPro) | |
| Tan04g0424 | 1175 | SMART | iq_5 | 901 | 923 | IPR000048 | GO:0005515(InterPro) | |
| Tan04g0424 | 1175 | SMART | iq_5 | 852 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Tan04g0424 | 1175 | SMART | iq_5 | 875 | 897 | IPR000048 | GO:0005515(InterPro) | |
| Tan04g0424 | 1175 | Coils | Coil | 971 | 1019 | - | - | |
| Tan04g0424 | 1175 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 126 | 175 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | CDD | MYSc_Myo8 | 193 | 839 | IPR036022 | - | |
| Tan04g0424 | 1175 | MobiDBLite | consensus disorder prediction | 1042 | 1075 | - | - | |
| Tan04g0424 | 1175 | FunFam | Myosin heavy chain | 361 | 417 | - | - | |
| Tan04g0424 | 1175 | SMART | MYSc_2a | 173 | 852 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | FunFam | Unconventional myosin-XIX | 549 | 741 | - | - | |
| Tan04g0424 | 1175 | MobiDBLite | consensus disorder prediction | 1059 | 1075 | - | - | |
| Tan04g0424 | 1175 | Gene3D | - | 855 | 903 | - | - | |
| Tan04g0424 | 1175 | Gene3D | - | 904 | 945 | - | - | |
| Tan04g0424 | 1175 | Gene3D | - | 549 | 741 | - | - | |
| Tan04g0424 | 1175 | Pfam | Myosin head (motor domain) | 181 | 839 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Tan04g0424 | 1175 | Gene3D | - | 361 | 417 | - | - | |
| Tan04g0424 | 1175 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 152 | 899 | IPR027417 | - | |
| Tan04g0424 | 1175 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 418 | 526 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g4458 | Tan-Chr1:109916224 | Tan04g0424 | Tan-Chr4:3559476 | 0.00E+00 | dispersed | |
| Tan04g0424 | Tan-Chr4:3559476 | Tan09g1110 | Tan-Chr9:63396910 | 1.90E-169 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g0424 | - | - | - | 0.0 |