Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0507 ATGGAAAACGTGGAGGAAATGAAGCCATCAGCTACAAATAATTTCCATGCTGATGGCGAAACAGACACTGTTGAAGTTCAATTCTCACAATTGTGTCAGAATGGGTTATGTCTGGATGAGAGTTGTTGTAATCAAGCGGTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCGAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGATTTTGGTCTGCCTTTGTTTTATATTCTGTAAAGAGGCTGAGAGATAAGAGTCCAGAGAGTTCACATCAGGGACCTGAGAACAATAGCTTTACTTTATGCCACATATTGAGATTTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCTACTGGTTACTTGTCTGATTTCCATCGTTTTGGATGGTTGTTGTTTTTGGCTCTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATGTTCCTGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTTGTTAAGAAAGGCGGAAAAGGAGTGGACCTGCTCGGATCACTTTGTAATGTCTATGACACCTCAGGGGAAGAACTGAGGGAAGTAATGGAGAAGGCAAATAGTTTGATAGAAGAAATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAATAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATATTTTGAAGACTTAATGGAGGAGTCATCTTTTTCTTCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTGTTTGTTAACGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCGGCAGGGGCTGTTACGATGAGTGGCATCAAGAGGAAGTTTGACTCAATGTACTCACCTGCAAGGACAATAACAAGTCCAATGTCTCCACTTCGCTCTCCTGCCTCACATGCCAATGGCACTCTTAATAGTGGCAACGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACGACGGCAAAATGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAATCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTTGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAAAGGTTCCATAGATGCATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACACAAAACGGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTTAGTAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGGGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGCTATTACAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAGCCTGCCCTTGCTGCTGAAATAAATCGTCTGGGCTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTATTGGGGTATCAAACATGCCTAATTTGCAAAAGCACGAGAGTTTGCCAGGTCAGAATGGGGATATAAGGTCACCAAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCTTTCAGTAATATTAAGTCTAAACTTCTACCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGCGGAGAAACGTGTGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCATTATTATTCAACCGTCACATTGACCAAATCATCCTTTGTTGTTTTTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAGATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTCCGCAACGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAAATCGGGGCTGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTACTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACCGACAGGGTTCCTCAAGTCAACAACAATAGTGATGCACCTTGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGGTCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGTCCCTCAAAAGACCTCACCGCCATAAACAACCGTTTGAATGGAACACGGAAACTCCGAGGCACGCTAAATTTTGATGATGCAGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCATCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA 3069 41.67 MENVEEMKPSATNNFHADGETDTVEVQFSQLCQNGLCLDESCCNQAVKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKSPESSHQGPENNSFTLCHILRFCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSAISCPTGYLSDFHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLLGSLCNVYDTSGEELREVMEKANSLIEEILKKKPRLASECNSKSLENIDTEGLIYFEDLMEESSFSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMYSPARTITSPMSPLRSPASHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLQSMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSNMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGKSGLDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4194041 4202860 + Tan0013887.1 Tan04g0507 748911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0507 1022 FunFam Retinoblastoma-related protein 1 693 903 - -
Tan04g0507 1022 Gene3D - 197 355 - -
Tan04g0507 1022 FunFam Retinoblastoma-related protein 1 197 355 - -
Tan04g0507 1022 SUPERFAMILY Cyclin-like 741 910 IPR036915 -
Tan04g0507 1022 SMART RB_A_2 418 619 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Tan04g0507 1022 Pfam Retinoblastoma-associated protein B domain 743 870 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
Tan04g0507 1022 Pfam Retinoblastoma-associated protein A domain 418 619 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
Tan04g0507 1022 Coils Coil 274 294 - -
Tan04g0507 1022 Pfam Domain of unknown function (DUF3452) 100 236 IPR024599 -
Tan04g0507 1022 SUPERFAMILY Cyclin-like 426 621 IPR036915 -
Tan04g0507 1022 FunFam Retinoblastoma-related protein 1 421 609 - -
Tan04g0507 1022 Gene3D - 421 609 - -
Tan04g0507 1022 Gene3D - 706 897 - -
Tan04g0507 1022 CDD CYCLIN_AtRBR_like 743 874 - -
Tan04g0507 1022 MobiDBLite consensus disorder prediction 391 410 - -
Tan04g0507 1022 MobiDBLite consensus disorder prediction 884 916 - -
Tan04g0507 1022 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 12 1019 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
Tan04g0507 1022 SMART DUF3452_2 87 236 IPR024599 -
Tan04g0507 1022 MobiDBLite consensus disorder prediction 885 900 - -
Tan04g0507 1022 Coils Coil 331 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0507 Tan-Chr4:4194041 Tan04g0508 Tan-Chr4:4194041 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27170 PF01858 RB_A 1.80E-63 CL0065 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0507 K04681 - csv:101219810 1882.84