Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0507 | ATGGAAAACGTGGAGGAAATGAAGCCATCAGCTACAAATAATTTCCATGCTGATGGCGAAACAGACACTGTTGAAGTTCAATTCTCACAATTGTGTCAGAATGGGTTATGTCTGGATGAGAGTTGTTGTAATCAAGCGGTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCGAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGATTTTGGTCTGCCTTTGTTTTATATTCTGTAAAGAGGCTGAGAGATAAGAGTCCAGAGAGTTCACATCAGGGACCTGAGAACAATAGCTTTACTTTATGCCACATATTGAGATTTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCTACTGGTTACTTGTCTGATTTCCATCGTTTTGGATGGTTGTTGTTTTTGGCTCTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATGTTCCTGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTTGTTAAGAAAGGCGGAAAAGGAGTGGACCTGCTCGGATCACTTTGTAATGTCTATGACACCTCAGGGGAAGAACTGAGGGAAGTAATGGAGAAGGCAAATAGTTTGATAGAAGAAATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAATAGTAAAAGCTTGGAGAATATTGACACTGAGGGTTTGATATATTTTGAAGACTTAATGGAGGAGTCATCTTTTTCTTCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTGTTTGTTAACGATGAGGACAGTTTACTTGGGTCGGGTAGCTTGTCGGCAGGGGCTGTTACGATGAGTGGCATCAAGAGGAAGTTTGACTCAATGTACTCACCTGCAAGGACAATAACAAGTCCAATGTCTCCACTTCGCTCTCCTGCCTCACATGCCAATGGCACTCTTAATAGTGGCAACGCAAAACTTGCTGCCACACCTGTTAGCACAGCCATGACGACGGCAAAATGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGCTGTATAGCTGGAAATTTACAAAGTGCAAATCTCATGGATAACATCTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTTGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAAAGGTTCCATAGATGCATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACACAAAACGGTTACAATGTTGTTTCCTGCAGTATTGGAGAGAACTGGCATTACAGCTTTTGACCTTAGTAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGGGAATTGAGGCGACATCTTAATTCCTTGGAAGAACGGCTATTACAGAGCATGGTATGGGAAAAAGGTTCATCAATGTATAACTCCCTGATTGTTGCTAAGCCTGCCCTTGCTGCTGAAATAAATCGTCTGGGCTTATTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAACTTTTCTGGTATTGGGGTATCAAACATGCCTAATTTGCAAAAGCACGAGAGTTTGCCAGGTCAGAATGGGGATATAAGGTCACCAAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCTTTCAGTAATATTAAGTCTAAACTTCTACCACCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGCGGAGAAACGTGTGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCATTATTATTCAACCGTCACATTGACCAAATCATCCTTTGTTGTTTTTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAGATCATTTACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTCCGCAACGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAAATCGGGGCTGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCTTCTGTAAAACCTTTACTTGTTGAGATTGGCCCGGCTGGATCAACCATGAAAACCGACAGGGTTCCTCAAGTCAACAACAATAGTGATGCACCTTGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCATTAAGGTCATCAAAGATGGATGCGTTGATTTCACATAGTTCTAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGTCCCTCAAAAGACCTCACCGCCATAAACAACCGTTTGAATGGAACACGGAAACTCCGAGGCACGCTAAATTTTGATGATGCAGACGTTGGTTTGGTCAGTGATTCTCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCATCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAA | 3069 | 41.67 | MENVEEMKPSATNNFHADGETDTVEVQFSQLCQNGLCLDESCCNQAVKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKSPESSHQGPENNSFTLCHILRFCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSAISCPTGYLSDFHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLLGSLCNVYDTSGEELREVMEKANSLIEEILKKKPRLASECNSKSLENIDTEGLIYFEDLMEESSFSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMYSPARTITSPMSPLRSPASHANGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLQSMVWEKGSSMYNSLIVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSNMPNLQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGKSGLDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS | 1022 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4194041 | 4202860 | + | Tan0013887.1 | Tan04g0507 | 748911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0507 | 1022 | FunFam | Retinoblastoma-related protein 1 | 693 | 903 | - | - | |
Tan04g0507 | 1022 | Gene3D | - | 197 | 355 | - | - | |
Tan04g0507 | 1022 | FunFam | Retinoblastoma-related protein 1 | 197 | 355 | - | - | |
Tan04g0507 | 1022 | SUPERFAMILY | Cyclin-like | 741 | 910 | IPR036915 | - | |
Tan04g0507 | 1022 | SMART | RB_A_2 | 418 | 619 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Tan04g0507 | 1022 | Pfam | Retinoblastoma-associated protein B domain | 743 | 870 | IPR002719 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Tan04g0507 | 1022 | Pfam | Retinoblastoma-associated protein A domain | 418 | 619 | IPR002720 | GO:0005634(InterPro)|GO:0051726(InterPro) | |
Tan04g0507 | 1022 | Coils | Coil | 274 | 294 | - | - | |
Tan04g0507 | 1022 | Pfam | Domain of unknown function (DUF3452) | 100 | 236 | IPR024599 | - | |
Tan04g0507 | 1022 | SUPERFAMILY | Cyclin-like | 426 | 621 | IPR036915 | - | |
Tan04g0507 | 1022 | FunFam | Retinoblastoma-related protein 1 | 421 | 609 | - | - | |
Tan04g0507 | 1022 | Gene3D | - | 421 | 609 | - | - | |
Tan04g0507 | 1022 | Gene3D | - | 706 | 897 | - | - | |
Tan04g0507 | 1022 | CDD | CYCLIN_AtRBR_like | 743 | 874 | - | - | |
Tan04g0507 | 1022 | MobiDBLite | consensus disorder prediction | 391 | 410 | - | - | |
Tan04g0507 | 1022 | MobiDBLite | consensus disorder prediction | 884 | 916 | - | - | |
Tan04g0507 | 1022 | PANTHER | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 12 | 1019 | IPR028309 | GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER) | |
Tan04g0507 | 1022 | SMART | DUF3452_2 | 87 | 236 | IPR024599 | - | |
Tan04g0507 | 1022 | MobiDBLite | consensus disorder prediction | 885 | 900 | - | - | |
Tan04g0507 | 1022 | Coils | Coil | 331 | 351 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0507 | Tan-Chr4:4194041 | Tan04g0508 | Tan-Chr4:4194041 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27170 | PF01858 | RB_A | 1.80E-63 | CL0065 | Tan | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0507 | K04681 | - | csv:101219810 | 1882.84 |