Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0515 ATGCCGGGTTTCGCTTCAGAGATATCCATTTGTAACCAACTTATTACAGAGAACCTCAAAGTATATGCCATGACTGATGTCAGTCCAAGGACCGACATCTCTACAGATGTCGACACAGATGACAAAAACCAGAGGCTTGATATGGGCCAGCGTAATGCTGTTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAAAATCGTGAAGCTGCCCGAAAAAGCCGACTACGGAAAAAAGCATATGTTCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGACCCATTCGATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAACAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGGTTGTCGATGGTGTCTTGCTTCATTACGATGAGGTTTTTCGGCTAAAAGGCGTTGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAACGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCTTAAAGCTTCTTGTTAATCAGTTAGAGCCCCTCACAGAACAGCAGTTGCTGGGCATATCCAACTTGCAGCAGTCCTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAACAATCGTTGGCTGAGACGTTGTCCAGTGGATCCCTTGGCTCCTCGAATACGTCTGGCAATGTGGCGAACTACATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACTCTTGAGGGGTTTATTCGTCAGGCTGACAATCTACGGCAACAGACACTGCAACAAATGCATCGAATATTGACAACTCGTCAGTCAGCTCGTGCACTTCTTGCAATCCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCCCTCTGGCTTGCTCGTCCAAAAGAGTGA 1068 46.54 MPGFASEISICNQLITENLKVYAMTDVSPRTDISTDVDTDDKNQRLDMGQRNAVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGVLLHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 355
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 4258311 4265617 - Tan0008177.2 Tan04g0515 748919
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0515 355 Pfam Seed dormancy control 152 227 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan04g0515 355 Coils Coil 89 116 - -
Tan04g0515 355 PANTHER TRANSCRIPTION FACTOR TGA9 41 355 - -
Tan04g0515 355 ProSiteProfiles DOG1 domain profile. 135 352 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan04g0515 355 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 73 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0515 355 Gene3D - 69 121 - -
Tan04g0515 355 Coils Coil 146 166 - -
Tan04g0515 355 MobiDBLite consensus disorder prediction 33 47 - -
Tan04g0515 355 FunFam BZIP family transcription factor 69 118 - -
Tan04g0515 355 SUPERFAMILY Leucine zipper domain 70 113 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0515 355 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 68 112 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0515 355 SMART brlzneu 66 129 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0515 355 MobiDBLite consensus disorder prediction 31 71 - -
Tan04g0515 355 Pfam bZIP transcription factor 70 110 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0515 Tan-Chr4:4258311 Tan11g1871 Tan-Chr11:24285573 7.50E-117 dispersed
Tan04g0514 Tan-Chr4:4258311 Tan04g0515 Tan-Chr4:4258311 2.80E-180 tandem
Tan04g0515 Tan-Chr4:4258311 Tan04g0516 Tan-Chr4:4258311 2.30E-166 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27173 PF14144 DOG1 4.60E-32 No_clan Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0515 K14431 - csv:101216885 583.948