Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0515 | ATGCCGGGTTTCGCTTCAGAGATATCCATTTGTAACCAACTTATTACAGAGAACCTCAAAGTATATGCCATGACTGATGTCAGTCCAAGGACCGACATCTCTACAGATGTCGACACAGATGACAAAAACCAGAGGCTTGATATGGGCCAGCGTAATGCTGTTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAAAATCGTGAAGCTGCCCGAAAAAGCCGACTACGGAAAAAAGCATATGTTCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGACCCATTCGATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAACAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCAAGTGATACTGAACTTCGAATGGTTGTCGATGGTGTCTTGCTTCATTACGATGAGGTTTTTCGGCTAAAAGGCGTTGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAACGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCAGAGCTCTTAAAGCTTCTTGTTAATCAGTTAGAGCCCCTCACAGAACAGCAGTTGCTGGGCATATCCAACTTGCAGCAGTCCTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCGTTGCAACAATCGTTGGCTGAGACGTTGTCCAGTGGATCCCTTGGCTCCTCGAATACGTCTGGCAATGTGGCGAACTACATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACTCTTGAGGGGTTTATTCGTCAGGCTGACAATCTACGGCAACAGACACTGCAACAAATGCATCGAATATTGACAACTCGTCAGTCAGCTCGTGCACTTCTTGCAATCCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCCCTCTGGCTTGCTCGTCCAAAAGAGTGA | 1068 | 46.54 | MPGFASEISICNQLITENLKVYAMTDVSPRTDISTDVDTDDKNQRLDMGQRNAVVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGVLLHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4258311 | 4265617 | - | Tan0008177.2 | Tan04g0515 | 748919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0515 | 355 | Pfam | Seed dormancy control | 152 | 227 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Tan04g0515 | 355 | Coils | Coil | 89 | 116 | - | - | |
Tan04g0515 | 355 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 41 | 355 | - | - | |
Tan04g0515 | 355 | ProSiteProfiles | DOG1 domain profile. | 135 | 352 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Tan04g0515 | 355 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 73 | 88 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0515 | 355 | Gene3D | - | 69 | 121 | - | - | |
Tan04g0515 | 355 | Coils | Coil | 146 | 166 | - | - | |
Tan04g0515 | 355 | MobiDBLite | consensus disorder prediction | 33 | 47 | - | - | |
Tan04g0515 | 355 | FunFam | BZIP family transcription factor | 69 | 118 | - | - | |
Tan04g0515 | 355 | SUPERFAMILY | Leucine zipper domain | 70 | 113 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0515 | 355 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 68 | 112 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0515 | 355 | SMART | brlzneu | 66 | 129 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0515 | 355 | MobiDBLite | consensus disorder prediction | 31 | 71 | - | - | |
Tan04g0515 | 355 | Pfam | bZIP transcription factor | 70 | 110 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0515 | Tan-Chr4:4258311 | Tan11g1871 | Tan-Chr11:24285573 | 7.50E-117 | dispersed | |
Tan04g0514 | Tan-Chr4:4258311 | Tan04g0515 | Tan-Chr4:4258311 | 2.80E-180 | tandem | |
Tan04g0515 | Tan-Chr4:4258311 | Tan04g0516 | Tan-Chr4:4258311 | 2.30E-166 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27173 | PF14144 | DOG1 | 4.60E-32 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0515 | K14431 | - | csv:101216885 | 583.948 |