Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0532 ATGGCTCTTGTTTCTGCAGAGGCTCAATTTCATGTGTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTGATTGAAAGGCTGCTCAAAACCTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTTTGGGTTTAGTTAGAGAGAGAAATGGAAGCACCCATTCTTCTGTTTCCCATGAAAATCATCACCATCATCAGGAAATTGAAGTGAATCTTATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGGATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTCTGCTAAAACCAGTGAAATTATCTGATGTCAACAAGCTTAAGCCTTTCATTTGTAGAGGAAAAGCCAAGGAAATGGAATCCAACATTCTCATGAGAAAGGAAATGGAACAGATCCAATCATGTGAGAGAACAAGAACAAAATACAATGTTCATTCCTAA 552 39.49 MALVSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSSVSHENHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMESNILMRKEMEQIQSCERTRTKYNVHS 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4565364 4567400 + Tan0005613.1 Tan04g0532 748936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0532 183 SUPERFAMILY CheY-like 10 143 IPR011006 -
Tan04g0532 183 SMART REC_2 10 145 IPR001789 GO:0000160(InterPro)
Tan04g0532 183 CDD REC_typeA_ARR 12 144 - -
Tan04g0532 183 ProSiteProfiles Response regulatory domain profile. 11 149 IPR001789 GO:0000160(InterPro)
Tan04g0532 183 Gene3D - 11 179 - -
Tan04g0532 183 Pfam Response regulator receiver domain 12 141 IPR001789 GO:0000160(InterPro)
Tan04g0532 183 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 167 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0532 Tan-Chr4:4565364 Tan08g1252 Tan-Chr8:38118784 1.20E-54 dispersed
Tan04g0532 Tan-Chr4:4565364 Tan09g2194 Tan-Chr9:71968697 2.40E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27178 PF00072 Response_reg 3.50E-20 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0532 K14492 - csv:101207245 264.233