Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0538 | ATGAGTTTCGATTCATTTATGCTAAACATGTCGATGAAGTTACACCATATTGATCTAAAGGGTGGTTCAGGTACACAGAAAAGGCTGAAGGATCTCTCAGCTCAGTCTGCCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGAGCTTTGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTTGGGGTGCACATATCTAAGGTTCTTTCAGTGAAGTTAGATGAGTGGACAGATGAACAAGTTGACGCTTTGATGAGTGTTGGTGGAAATACTGCCGTAAACAAAAAGTACGAAGTTTGCATAACAGATGGCAATAAAAAGCCTAAGCCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTACAATTCACAAGTCTTGATGACCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCATTATCGAGTACCTCTTCTAATGAAAATGGAAACCAAGAAAAAAGGAGTTATGAAAAACTACCTACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAATTGCAAGAAGGGAAGTTCATTGGTATTAAGCAGCTCAATGGCAGGTATGGTTGAATTTGTTGGTTTAATTAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTTAGGGATGTCGTGACGAGCGATCCGTATGTAATTCTCTCGTTGGGTAATCAAGTGAGACTCCCTAGTGAACTTTTCTCATATTTTCATTGCTTATGGGGTGGGAAATTGCCTGAATTCACCTGTTCTTACATACTTTGCAGTCGGTGA | 861 | 40.53 | MSFDSFMLNMSMKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDEWTDEQVDALMSVGGNTAVNKKYEVCITDGNKKPKPDSSIEERFDFIRKKYELLQFTSLDDQFFCPFPPPQKRNSSLSSTSSNENGNQEKRSYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGSSLVLSSSMAGMVEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGNQVRLPSELFSYFHCLWGGKLPEFTCSYILCSR | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4614882 | 4621491 | - | Tan0001186.2 | Tan04g0538 | 748942 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0538 | 286 | PRINTS | HIV Rev interacting protein signature | 57 | 74 | IPR001164 | GO:0005096(InterPro) | |
Tan04g0538 | 286 | PRINTS | HIV Rev interacting protein signature | 78 | 99 | IPR001164 | GO:0005096(InterPro) | |
Tan04g0538 | 286 | PRINTS | HIV Rev interacting protein signature | 38 | 57 | IPR001164 | GO:0005096(InterPro) | |
Tan04g0538 | 286 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 222 | 256 | IPR035892 | - | |
Tan04g0538 | 286 | CDD | ArfGap | 29 | 135 | - | - | |
Tan04g0538 | 286 | SMART | arf_gap_3 | 26 | 148 | IPR001164 | GO:0005096(InterPro) | |
Tan04g0538 | 286 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 26 | 141 | IPR037278 | - | |
Tan04g0538 | 286 | Pfam | Putative GTPase activating protein for Arf | 27 | 141 | IPR001164 | GO:0005096(InterPro) | |
Tan04g0538 | 286 | MobiDBLite | consensus disorder prediction | 154 | 171 | - | - | |
Tan04g0538 | 286 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 26 | 141 | IPR001164 | GO:0005096(InterPro) | |
Tan04g0538 | 286 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 20 | 255 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Tan04g0538 | 286 | MobiDBLite | consensus disorder prediction | 154 | 178 | - | - | |
Tan04g0538 | 286 | FunFam | stromal membrane-associated protein 1 isoform X1 | 14 | 146 | - | - | |
Tan04g0538 | 286 | Gene3D | Arf GTPase activating protein | 12 | 147 | IPR038508 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0538 | Tan-Chr4:4614882 | Tan11g1555 | Tan-Chr11:14351095 | 2.80E-82 | dispersed | |
Tan04g0537 | Tan-Chr4:4614882 | Tan04g0538 | Tan-Chr4:4614882 | 1.60E-144 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0538 | K12486 | - | csv:101221541 | 462.611 |