Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0538 ATGAGTTTCGATTCATTTATGCTAAACATGTCGATGAAGTTACACCATATTGATCTAAAGGGTGGTTCAGGTACACAGAAAAGGCTGAAGGATCTCTCAGCTCAGTCTGCCAATAAGTACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGAGCTTTGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTTGGGGTGCACATATCTAAGGTTCTTTCAGTGAAGTTAGATGAGTGGACAGATGAACAAGTTGACGCTTTGATGAGTGTTGGTGGAAATACTGCCGTAAACAAAAAGTACGAAGTTTGCATAACAGATGGCAATAAAAAGCCTAAGCCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTACAATTCACAAGTCTTGATGACCAGTTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATCATTATCGAGTACCTCTTCTAATGAAAATGGAAACCAAGAAAAAAGGAGTTATGAAAAACTACCTACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAATTGCAAGAAGGGAAGTTCATTGGTATTAAGCAGCTCAATGGCAGGTATGGTTGAATTTGTTGGTTTAATTAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTTAGGGATGTCGTGACGAGCGATCCGTATGTAATTCTCTCGTTGGGTAATCAAGTGAGACTCCCTAGTGAACTTTTCTCATATTTTCATTGCTTATGGGGTGGGAAATTGCCTGAATTCACCTGTTCTTACATACTTTGCAGTCGGTGA 861 40.53 MSFDSFMLNMSMKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDEWTDEQVDALMSVGGNTAVNKKYEVCITDGNKKPKPDSSIEERFDFIRKKYELLQFTSLDDQFFCPFPPPQKRNSSLSSTSSNENGNQEKRSYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGSSLVLSSSMAGMVEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGNQVRLPSELFSYFHCLWGGKLPEFTCSYILCSR 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4614882 4621491 - Tan0001186.2 Tan04g0538 748942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0538 286 PRINTS HIV Rev interacting protein signature 57 74 IPR001164 GO:0005096(InterPro)
Tan04g0538 286 PRINTS HIV Rev interacting protein signature 78 99 IPR001164 GO:0005096(InterPro)
Tan04g0538 286 PRINTS HIV Rev interacting protein signature 38 57 IPR001164 GO:0005096(InterPro)
Tan04g0538 286 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 222 256 IPR035892 -
Tan04g0538 286 CDD ArfGap 29 135 - -
Tan04g0538 286 SMART arf_gap_3 26 148 IPR001164 GO:0005096(InterPro)
Tan04g0538 286 SUPERFAMILY ArfGap/RecO-like zinc finger 26 141 IPR037278 -
Tan04g0538 286 Pfam Putative GTPase activating protein for Arf 27 141 IPR001164 GO:0005096(InterPro)
Tan04g0538 286 MobiDBLite consensus disorder prediction 154 171 - -
Tan04g0538 286 ProSiteProfiles ARF GTPase-activating proteins domain profile. 26 141 IPR001164 GO:0005096(InterPro)
Tan04g0538 286 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 20 255 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Tan04g0538 286 MobiDBLite consensus disorder prediction 154 178 - -
Tan04g0538 286 FunFam stromal membrane-associated protein 1 isoform X1 14 146 - -
Tan04g0538 286 Gene3D Arf GTPase activating protein 12 147 IPR038508 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0538 Tan-Chr4:4614882 Tan11g1555 Tan-Chr11:14351095 2.80E-82 dispersed
Tan04g0537 Tan-Chr4:4614882 Tan04g0538 Tan-Chr4:4614882 1.60E-144 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0538 K12486 - csv:101221541 462.611