Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0539 | ATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCGGAGGTTATCGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGTCTAATGCAGCTGTCTCTAGTAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGATGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCCGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGCGTGGGCATATACCCGTACTATAGCAAGCTTAAACATGAATCTCAATGTGTCTACCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTCATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTCAAGTCGAATCCGCAAGAGGTTGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGCCAGTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCATTCTTGCGGTTTATGGGTGACGATAACGAAGCCAAGAACTACAGTTATAGCCTAGAGGTTGGTGGCAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATCATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAGGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA | 918 | 46.08 | MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKSNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4623314 | 4628810 | - | Tan0021439.1 | Tan04g0539 | 748943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0539 | 305 | SUPERFAMILY | TRAF domain-like | 110 | 302 | - | - | |
Tan04g0539 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270(InterPro) | |
Tan04g0539 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 166 | 298 | - | - | |
Tan04g0539 | 305 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Tan04g0539 | 305 | Pfam | Sina, TRAF-like domain | 201 | 298 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Tan04g0539 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
Tan04g0539 | 305 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 57 | 92 | IPR049548 | - | |
Tan04g0539 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 35 | 300 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Tan04g0539 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 15 | 108 | - | - | |
Tan04g0539 | 305 | Pfam | Sina, zinc finger | 106 | 181 | - | - | |
Tan04g0539 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 109 | 165 | - | - | |
Tan04g0539 | 305 | SUPERFAMILY | RING/U-box | 49 | 97 | - | - | |
Tan04g0539 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | IPR013083 | - | |
Tan04g0539 | 305 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Tan04g0539 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 298 | IPR008974 | GO:0005515(InterPro) | |
Tan04g0539 | 305 | CDD | Sina | 171 | 299 | - | - | |
Tan04g0539 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 109 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g0169 | Tan-Chr3:28793391 | Tan04g0539 | Tan-Chr4:4623314 | 7.60E-134 | dispersed | |
Tan03g0170 | Tan-Chr3:28793391 | Tan04g0539 | Tan-Chr4:4623314 | 7.60E-134 | dispersed | |
Tan04g0539 | Tan-Chr4:4623314 | Tan04g0542 | Tan-Chr4:4623314 | 3.20E-185 | dispersed | |
Tan04g0539 | Tan-Chr4:4623314 | Tan04g0540 | Tan-Chr4:4623314 | 3.30E-121 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0539 | K04506 | - | csv:101205198 | 623.624 |