Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0539 ATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCGGAGGTTATCGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGTCTAATGCAGCTGTCTCTAGTAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGATGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCCGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGCGTGGGCATATACCCGTACTATAGCAAGCTTAAACATGAATCTCAATGTGTCTACCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTCATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTCAAGTCGAATCCGCAAGAGGTTGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGCCAGTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCATTCTTGCGGTTTATGGGTGACGATAACGAAGCCAAGAACTACAGTTATAGCCTAGAGGTTGGTGGCAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATCATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAGGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 918 46.08 MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKSNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4623314 4628810 - Tan0021439.1 Tan04g0539 748943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0539 305 SUPERFAMILY TRAF domain-like 110 302 - -
Tan04g0539 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Tan04g0539 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Tan04g0539 305 CDD RING-HC_SIAHs 55 93 - -
Tan04g0539 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Tan04g0539 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Tan04g0539 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Tan04g0539 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 35 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan04g0539 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Tan04g0539 305 Pfam Sina, zinc finger 106 181 - -
Tan04g0539 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Tan04g0539 305 SUPERFAMILY RING/U-box 49 97 - -
Tan04g0539 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Tan04g0539 305 MobiDBLite consensus disorder prediction 1 45 - -
Tan04g0539 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515(InterPro)
Tan04g0539 305 CDD Sina 171 299 - -
Tan04g0539 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0169 Tan-Chr3:28793391 Tan04g0539 Tan-Chr4:4623314 7.60E-134 dispersed
Tan03g0170 Tan-Chr3:28793391 Tan04g0539 Tan-Chr4:4623314 7.60E-134 dispersed
Tan04g0539 Tan-Chr4:4623314 Tan04g0542 Tan-Chr4:4623314 3.20E-185 dispersed
Tan04g0539 Tan-Chr4:4623314 Tan04g0540 Tan-Chr4:4623314 3.30E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0539 K04506 - csv:101205198 623.624