Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0541 ATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCGGAGGTTATCGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGTCTAATGCAGCTGTCTCTAGTAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGATGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCCGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGCGTGGGCATATACCCGTACTATAGCAAGCTTAAACATGAATCTCAATGTGTCTACCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTCATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTCAAGTCGAATCCGCAAGAGGTTGAAAATGCTACCTGGATGTTAACGGTACTAATCTGCTTCTTATTTTGTCATGTTTGGGTTATTGGCCTGTCAAATTGTGTTCAACATATATTCGAATGA 672 44.05 MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKSNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVLICFLFCHVWVIGLSNCVQHIFE 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4623314 4628810 - Tan0021439.3 Tan04g0541 748945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0541 223 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Tan04g0541 223 Pfam Sina, zinc finger 106 181 - -
Tan04g0541 223 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Tan04g0541 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Tan04g0541 223 CDD RING-HC_SIAHs 55 93 - -
Tan04g0541 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 109 IPR013083 -
Tan04g0541 223 SUPERFAMILY RING/U-box 47 99 - -
Tan04g0541 223 SUPERFAMILY TRAF domain-like 110 204 - -
Tan04g0541 223 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Tan04g0541 223 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 207 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan04g0541 223 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Tan04g0541 223 MobiDBLite consensus disorder prediction 1 45 - -
Tan04g0541 223 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0541 Tan-Chr4:4623314 Tan04g0543 Tan-Chr4:4623314 2.90E-135 dispersed
Tan04g0540 Tan-Chr4:4623314 Tan04g0541 Tan-Chr4:4623314 2.90E-135 tandem
Tan04g0541 Tan-Chr4:4623314 Tan04g0542 Tan-Chr4:4623314 8.30E-122 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0541 K04506 - csv:101205198 412.149