Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0541 | ATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCGGAGGTTATCGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGTCTAATGCAGCTGTCTCTAGTAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGATGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCCGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGCGTGGGCATATACCCGTACTATAGCAAGCTTAAACATGAATCTCAATGTGTCTACCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTCATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTCAAGTCGAATCCGCAAGAGGTTGAAAATGCTACCTGGATGTTAACGGTACTAATCTGCTTCTTATTTTGTCATGTTTGGGTTATTGGCCTGTCAAATTGTGTTCAACATATATTCGAATGA | 672 | 44.05 | MSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKSNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVLICFLFCHVWVIGLSNCVQHIFE | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4623314 | 4628810 | - | Tan0021439.3 | Tan04g0541 | 748945 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0541 | 223 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 109 | 165 | - | - | |
Tan04g0541 | 223 | Pfam | Sina, zinc finger | 106 | 181 | - | - | |
Tan04g0541 | 223 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270(InterPro) | |
Tan04g0541 | 223 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | IPR013083 | - | |
Tan04g0541 | 223 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Tan04g0541 | 223 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 109 | IPR013083 | - | |
Tan04g0541 | 223 | SUPERFAMILY | RING/U-box | 47 | 99 | - | - | |
Tan04g0541 | 223 | SUPERFAMILY | TRAF domain-like | 110 | 204 | - | - | |
Tan04g0541 | 223 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
Tan04g0541 | 223 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 34 | 207 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Tan04g0541 | 223 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 15 | 108 | - | - | |
Tan04g0541 | 223 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Tan04g0541 | 223 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 57 | 92 | IPR049548 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0541 | Tan-Chr4:4623314 | Tan04g0543 | Tan-Chr4:4623314 | 2.90E-135 | dispersed | |
Tan04g0540 | Tan-Chr4:4623314 | Tan04g0541 | Tan-Chr4:4623314 | 2.90E-135 | tandem | |
Tan04g0541 | Tan-Chr4:4623314 | Tan04g0542 | Tan-Chr4:4623314 | 8.30E-122 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0541 | K04506 | - | csv:101205198 | 412.149 |