Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0542 | ATGCATGTAGGCATTCTATTGATTAAAATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCGGAGGTTATCGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGTCTAATGCAGCTGTCTCTAGTAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGATGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCCGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGCGTGGGCATATACCCGTACTATAGCAAGCTTAAACATGAATCTCAATGTGTCTACCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTCATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTCAAGTCGAATCCGCAAGAGGTTGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGCCAGTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCATTCTTGCGGTTTATGGGTGACGATAACGAAGCCAAGAACTACAGTTATAGCCTAGAGGTTGGTGGCAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATCATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAGGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA | 945 | 45.61 | MHVGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKSNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4623314 | 4628810 | - | Tan0021439.4 | Tan04g0542 | 748946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0542 | 314 | MobiDBLite | consensus disorder prediction | 23 | 54 | - | - | |
Tan04g0542 | 314 | CDD | RING-HC_SIAHs | 64 | 102 | - | - | |
Tan04g0542 | 314 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 66 | 101 | IPR049548 | - | |
Tan04g0542 | 314 | CDD | Sina | 180 | 308 | - | - | |
Tan04g0542 | 314 | SUPERFAMILY | TRAF domain-like | 119 | 311 | - | - | |
Tan04g0542 | 314 | SUPERFAMILY | RING/U-box | 58 | 106 | - | - | |
Tan04g0542 | 314 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 175 | 307 | IPR008974 | GO:0005515(InterPro) | |
Tan04g0542 | 314 | Pfam | Sina, zinc finger | 115 | 190 | - | - | |
Tan04g0542 | 314 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 175 | 307 | - | - | |
Tan04g0542 | 314 | Pfam | Sina, TRAF-like domain | 210 | 307 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Tan04g0542 | 314 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 24 | 117 | - | - | |
Tan04g0542 | 314 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 118 | 174 | - | - | |
Tan04g0542 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 174 | IPR013083 | - | |
Tan04g0542 | 314 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 44 | 309 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Tan04g0542 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 118 | IPR013083 | - | |
Tan04g0542 | 314 | ProSiteProfiles | Zinc finger RING-type profile. | 66 | 102 | IPR001841 | - | |
Tan04g0542 | 314 | ProSiteProfiles | Zinc finger SIAH-type profile. | 119 | 179 | IPR013010 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0539 | Tan-Chr4:4623314 | Tan04g0542 | Tan-Chr4:4623314 | 3.20E-185 | dispersed | |
Tan04g0542 | Tan-Chr4:4623314 | Tan07g1074 | Tan-Chr7:30774004 | 7.20E-172 | dispersed | |
Tan04g0541 | Tan-Chr4:4623314 | Tan04g0542 | Tan-Chr4:4623314 | 8.30E-122 | tandem | |
Tan04g0542 | Tan-Chr4:4623314 | Tan04g0543 | Tan-Chr4:4623314 | 2.10E-126 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0542 | K04506 | - | csv:101205198 | 623.624 |