Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0542 ATGCATGTAGGCATTCTATTGATTAAAATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCGGAGGTTATCGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGTCTAATGCAGCTGTCTCTAGTAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGATGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCCGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGCGTGGGCATATACCCGTACTATAGCAAGCTTAAACATGAATCTCAATGTGTCTACCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTCATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTCAAGTCGAATCCGCAAGAGGTTGAAAATGCTACCTGGATGTTAACGGTTTTCAGCTGTTTTGGCCAGTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCATTCTTGCGGTTTATGGGTGACGATAACGAAGCCAAGAACTACAGTTATAGCCTAGAGGTTGGTGGCAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATCATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAGGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 945 45.61 MHVGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKSNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4623314 4628810 - Tan0021439.4 Tan04g0542 748946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0542 314 MobiDBLite consensus disorder prediction 23 54 - -
Tan04g0542 314 CDD RING-HC_SIAHs 64 102 - -
Tan04g0542 314 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 66 101 IPR049548 -
Tan04g0542 314 CDD Sina 180 308 - -
Tan04g0542 314 SUPERFAMILY TRAF domain-like 119 311 - -
Tan04g0542 314 SUPERFAMILY RING/U-box 58 106 - -
Tan04g0542 314 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 175 307 IPR008974 GO:0005515(InterPro)
Tan04g0542 314 Pfam Sina, zinc finger 115 190 - -
Tan04g0542 314 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 307 - -
Tan04g0542 314 Pfam Sina, TRAF-like domain 210 307 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Tan04g0542 314 FunFam E3 ubiquitin-protein ligase SINAT5-like 24 117 - -
Tan04g0542 314 FunFam E3 ubiquitin-protein ligase SINAT3 118 174 - -
Tan04g0542 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 174 IPR013083 -
Tan04g0542 314 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 44 309 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan04g0542 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 118 IPR013083 -
Tan04g0542 314 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Tan04g0542 314 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0539 Tan-Chr4:4623314 Tan04g0542 Tan-Chr4:4623314 3.20E-185 dispersed
Tan04g0542 Tan-Chr4:4623314 Tan07g1074 Tan-Chr7:30774004 7.20E-172 dispersed
Tan04g0541 Tan-Chr4:4623314 Tan04g0542 Tan-Chr4:4623314 8.30E-122 tandem
Tan04g0542 Tan-Chr4:4623314 Tan04g0543 Tan-Chr4:4623314 2.10E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0542 K04506 - csv:101205198 623.624