Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0543 ATGCATGTAGGCATTCTATTGATTAAAATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCGGAGGTTATCGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGTCTAATGCAGCTGTCTCTAGTAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTAAATGCCATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGATGTCCCACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCCGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGCGTGGGCATATACCCGTACTATAGCAAGCTTAAACATGAATCTCAATGTGTCTACCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACAGTCATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATATGTCAAGTCGAATCCGCAAGAGGTTGAAAATGCTACCTGGATGTTAACGGTACTAATCTGCTTCTTATTTTGTCATGTTTGGGTTATTGGCCTGTCAAATTGTGTTCAACATATATTCGAATGA 699 43.49 MHVGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKSNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVLICFLFCHVWVIGLSNCVQHIFE 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4623314 4628810 - Tan0021439.5 Tan04g0543 748947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0543 232 MobiDBLite consensus disorder prediction 23 54 - -
Tan04g0543 232 CDD RING-HC_SIAHs 64 102 - -
Tan04g0543 232 FunFam E3 ubiquitin-protein ligase SINAT3 118 174 - -
Tan04g0543 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 174 IPR013083 -
Tan04g0543 232 FunFam E3 ubiquitin-protein ligase SINAT5-like 24 117 - -
Tan04g0543 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 118 IPR013083 -
Tan04g0543 232 SUPERFAMILY TRAF domain-like 119 213 - -
Tan04g0543 232 SUPERFAMILY RING/U-box 56 108 - -
Tan04g0543 232 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 43 216 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan04g0543 232 Pfam Sina, zinc finger 115 190 - -
Tan04g0543 232 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 66 101 IPR049548 -
Tan04g0543 232 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Tan04g0543 232 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0540 Tan-Chr4:4623314 Tan04g0543 Tan-Chr4:4623314 2.90E-135 dispersed
Tan04g0541 Tan-Chr4:4623314 Tan04g0543 Tan-Chr4:4623314 2.90E-135 dispersed
Tan04g0543 Tan-Chr4:4623314 Tan07g1074 Tan-Chr7:30774004 2.90E-109 dispersed
Tan04g0542 Tan-Chr4:4623314 Tan04g0543 Tan-Chr4:4623314 2.10E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0543 K04506 - csv:101205198 412.149