Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0574 ATGTCGAAGGAAACAGCAGCTATTATGATTCAATCTGCATTTCGTGGATATACGGCAAGGAAAGCATTGAGGGGTCTCAAAGCATTGATGAGGTTGAGGTCATTGGTACAAGGGCACTCTGTGAAACGGCAGGTGGCCTCTACTTTAAAAAGCATGCAAACTCTTGCACATGTACAGTCTGAGATTCGTGCAAGGAGAATAAGAATTTCGGAGGAAAATCAGGCTTTCCAGCGGCAACTTCGTAACAAACGTGAGAAAGATCTCGAGAAGTTAAAAACTTCTGAGGATGACTGGAATCGTAGCACCCAATCTAAAGCGCAAATTGAAGCTAAATTATTGAACAAGCAAGAGGCTGCAATAAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCACATCAGCAAACATGGAAGAATTCTTCAAAAACTGCAACCCCTACTGTCATGGATCCAAACAATCCTCAATGGGGTTGGAGTTGGCTGGAGAGGTGGATGGCAGCTCGTCCATGGGAACCTCGAAACACTGAGGATCACCCGGATCACATTTCTGTGACGAGTGTTGCAACTCGTGCATCTGTGGTAGACATAATCCAAATTTATGCCCGTCGTGATCAGAACTCCCCTACCAAGCCTTCTTCAAAGACTCCTACTACCCAAAAGTCAAGCCAGCTGCATAGGCAACAGTCTCCTTCAATTCCCAAGGCATTATCTTCATCATCTAGCAGAAAGAAAACAAATCTAGCCAACTCAAGGATAGGCAGCTGGGGCGGGGATGATGACACGAGAAGCACTGCAAGTGTCAAGTCAAAGCTCTCCCGGAGGCATTCTATTGCAGGGTCATCATTTATGGACGACCTAAGCCTCGCCAGTTTACCTTCAGTTTCAAGTTACACAACGCCATCGAAGGCCGTGAAGGCTCGGTCCCGGTTGGCAAGTTCATCTGTGACAGAGAAGAAAGGGACGATGGAAAAAGGATCTGGAAGCACGGGTTTTGCAAAGAAGCGGCTCACCTTTACAGCTTCCCCTACTAAACCAAGGAGGCTATCAAGTCCTCCAATTGTGAATACTAGCTAA 1071 46.41 MSKETAAIMIQSAFRGYTARKALRGLKALMRLRSLVQGHSVKRQVASTLKSMQTLAHVQSEIRARRIRISEENQAFQRQLRNKREKDLEKLKTSEDDWNRSTQSKAQIEAKLLNKQEAAIRRERALAYAYSHQQTWKNSSKTATPTVMDPNNPQWGWSWLERWMAARPWEPRNTEDHPDHISVTSVATRASVVDIIQIYARRDQNSPTKPSSKTPTTQKSSQLHRQQSPSIPKALSSSSSRKKTNLANSRIGSWGGDDDTRSTASVKSKLSRRHSIAGSSFMDDLSLASLPSVSSYTTPSKAVKARSRLASSSVTEKKGTMEKGSGSTGFAKKRLTFTASPTKPRRLSSPPIVNTS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4837800 4841762 - Tan0015608.2 Tan04g0574 748978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0574 356 Coils Coil 66 86 - -
Tan04g0574 356 MobiDBLite consensus disorder prediction 331 356 - -
Tan04g0574 356 MobiDBLite consensus disorder prediction 200 274 - -
Tan04g0574 356 ProSiteProfiles IQ motif profile. 3 31 - -
Tan04g0574 356 PANTHER IQ-DOMAIN 5-RELATED 3 321 - -
Tan04g0574 356 Pfam IQ calmodulin-binding motif 6 24 IPR000048 GO:0005515(InterPro)
Tan04g0574 356 MobiDBLite consensus disorder prediction 293 356 - -
Tan04g0574 356 MobiDBLite consensus disorder prediction 201 261 - -
Tan04g0574 356 MobiDBLite consensus disorder prediction 293 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0574 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0574 Tan-Chr4:4837800 Tan11g0812 Tan-Chr11:6799965 4.40E-101 dispersed
Tan04g0573 Tan-Chr4:4837800 Tan04g0574 Tan-Chr4:4837800 3.10E-189 tandem
Tan04g0574 Tan-Chr4:4837800 Tan04g0575 Tan-Chr4:4837800 1.10E-189 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28