Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0597 ATGGCGAAAGATGACGTCACGGCGCGAGGGTTCTCCGGCAAGGACTACTACGACCCTCCTCCGGCTCCGCTGTTCGACGCGGCGGAGCTCGGTAAGTGGTCCTTTTACAGAGCCCTCATTGCCGAGTTCATCGCCACTCTCCTTTTTCTCTATATCACCATCTTGACTGTGATTGGCTACAGTAGCCAGACCGACCCCCACAAGCCCGGCGGCGACGCTTGCGGCGGCGTTGGCATCCTCGGCATCGCTTGGGGCTTCGGTGGCATGATCTTCGTCCTCGTCTATTGCACCGCCGGCATTTCAGGTGGGCATATCAACCCGGCGGTGACATTCGGGCTACTGTTAGCCCGTAAGGTGTCGCTGGTTCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTGGGGGCCGTATGCGGAACGGGGCTGGTTAAATCCTTACAAAAGGATTACTTCAACAAGTATGGCGGCGGCGCGAACCAGCTCGCCGACGGCTACAGCAAAGGCACCGGCTTGGGGGCCGAAATCGTCGGTACCTTCATCTTGGTCTACACCGTCTTCTCCGCCACCGACTCCAAGAGAAAAGCCAGAGACTCCCATGTTCCTGTACTGGCTCCACTCCCAATAGGATTTGCTGTGTTCATGGTTCACTTAGCCACCATCCCCGTTACCGGCACCAGCATCAACCCTGCTAGAAGCTTCGGCCCTGCTGTTATCTTGAATAGGGAAAAAGCTTGGGATGATCATGTCAGTATCACTTAA 756 56.88 MAKDDVTARGFSGKDYYDPPPAPLFDAAELGKWSFYRALIAEFIATLLFLYITILTVIGYSSQTDPHKPGGDACGGVGILGIAWGFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVAYMVAQCLGAVCGTGLVKSLQKDYFNKYGGGANQLADGYSKGTGLGAEIVGTFILVYTVFSATDSKRKARDSHVPVLAPLPIGFAVFMVHLATIPVTGTSINPARSFGPAVILNREKAWDDHVSIT 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5061882 5066595 - Tan0007114.2 Tan04g0597 749001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0597 251 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 248 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan04g0597 251 Pfam Major intrinsic protein 30 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 NCBIfam MIP family channel protein 41 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 Gene3D Glycerol uptake facilitator protein. 22 250 IPR023271 -
Tan04g0597 251 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 FunFam Probable aquaporin PIP1-2 22 250 - -
Tan04g0597 251 SUPERFAMILY Aquaporin-like 30 239 IPR023271 -
Tan04g0597 251 CDD MIP 37 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g0597 251 ProSitePatterns MIP family signature. 104 112 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0597 Tan-Chr4:5061882 Tan11g0853 Tan-Chr11:7002074 4.50E-108 dispersed
Tan04g0596 Tan-Chr4:5061882 Tan04g0597 Tan-Chr4:5061882 5.40E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0597 K09872 - csv:101204956 461.07