Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0612 ATGGCGTTACGACTGGTTTTGGTGCAACTTCGCATAGAAGAACCAAAGAAGGAGGAGCTCTTCAAAGAGAACTTATTAGGTTTTGAATCTTTGGAATCTTTGCATCGCGCACGAATCTTTCATAAATACACGCCATCGGCGTGGCGACTCAGAGCCGCCATGTTGGTGAGAATCAACACTCTTTTACAGGGCTATTCAGGCATTAGATTTGAGATTTTGGAAGCCATAGCCAAATTTCTAAACCATGATATTACTCCATGTTTGCCTTTAAGGGGAACCATAACTGCATCTGGTGATTTGGTTCCTCTTTCTTACATTGCTGGGCTTTTGATTGGAAGGCCCAATTCCAAGGCTGTTGGGCCTAATGGGGAGTTCATTAACTCATCTGAGGCCTTTGAGTTAGCTGGGCTTGATGGTGGATTTTTCGAGTTACAACCCAAAGAAGGTCTTGCTCTTGTGAATGGCACTGCTGTTGGATCTGGCTTGGCTTCTATAGTGCTTTTTGAAGCCAACATTTTGGTTGTTCTTTCAGAAGTGTTGTCGGCTGTTTTTGCTGAGGTTATGCAAGGGAAACCTGAATTTACTGATCATTTGACGCATAAGTTGAAGCATCATCCTGGTCAGATTGAAGCTGCAGCTATAATGGAACATATATTGGATGGAAGTTCTTATGTGAAATCGGCTCAAAAGTTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCTCCACAATGGCTTGGACCTCAAATTGAAGTCATTCGAGCTGCGACAAAGATGATTGAGAGGGAAATAAACTCAGTGAATGACAACCCTTTGATTGATGTTTCGAGAAACAAGGCATTACATGGAGGAAATTTTCAAGGCACACCAATTGGTGTCTCTATGGATAACACTAGATTGGCTATTGCTTCCATTGGAAAGCTTATGTTTGCTCAATTTTCAGAGCTCGTCAATGATTTTTACAACAATGGGTTGCCTTCTAATCTTTCGGCAAGCCACAATCCTAGCTTGGATTATGGCTTCAAAGGAGCTGAAATTGCTATGGCATCGTACTGTTCTGAACTTCAATTCTTGGCCAACCCTGTCACTAACCATGTCCAAAGTGCAGAACAACATAACCAAGATGTGAATTCTTTGGGGTTGATTTCTTCAAGAAAAACTGAAGAGGCAGTTGAGATATTGAAGTTGATGTCGACTACTTTTCTGGTAGCCCTTTGCCAAGCTATTGACTTGAGGCATCTAGAGGAAAATTTGAAGAGCACAGTGAAAAATACAATTAGTCAAGTAGCCAAGAAAGTACTAATCATGGGATATAATGGAGAACTTCACCCAATTCGATTTAGTGAAAAACATTTGCTTCAAGTGGTTGATAGAGAACATGTTTTCACTTATGTTGATGACCCTTGCAGTGCTACTTATCCACTAATGCAAAAGCTAAGACAAGTCTTAGTAGAGCATGCTCTGAACAATGGTGAAAAAGAGGAAAACTTAAGTACTTCAATTTTTCACAAGATAGGAGCATTTGAGGAAGAACTAAAAAACCTCCTGCCAAAAGAAGTAGAAAATGCAAGAATGGAATTTGAGAACAAAAGTTCGATAATTCCAAACCAAATCAAAGAATGCAGGTCCTACCCATTATACAAATTTATTAGAGAAACTTTAGGGACAAGTTTACTCACAGGTGAAGAAGTAAAATCTCCTGGTGAAGAATTCGATAAAGTTTTTTCGGCCATTTGTGTTGGACAATTGATTGATCCAATATTGGAATGCTTGAAAGGATGGAATGGTGCTCCTATTCCAATCAATTAA 1833 39.72 MALRLVLVQLRIEEPKKEELFKENLLGFESLESLHRARIFHKYTPSAWRLRAAMLVRINTLLQGYSGIRFEILEAIAKFLNHDITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGEFINSSEAFELAGLDGGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASHNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTTFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLIMGYNGELHPIRFSEKHLLQVVDREHVFTYVDDPCSATYPLMQKLRQVLVEHALNNGEKEENLSTSIFHKIGAFEEELKNLLPKEVENARMEFENKSSIIPNQIKECRSYPLYKFIRETLGTSLLTGEEVKSPGEEFDKVFSAICVGQLIDPILECLKGWNGAPIPIN 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5167652 5172787 + Tan0004785.1 Tan04g0612 749016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0612 610 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 92 108 IPR022313 GO:0016841(InterPro)
Tan04g0612 610 FunFam Phenylalanine ammonia-lyase 423 544 - -
Tan04g0612 610 PANTHER HISTIDINE AMMONIA-LYASE 47 609 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Tan04g0612 610 Gene3D - 8 156 IPR024083 -
Tan04g0612 610 FunFam Phenylalanine ammonia-lyase 157 440 - -
Tan04g0612 610 Gene3D - 423 544 IPR023144 -
Tan04g0612 610 NCBIfam phenylalanine ammonia-lyase 25 600 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan04g0612 610 SUPERFAMILY L-aspartase-like 46 609 IPR008948 GO:0003824(InterPro)
Tan04g0612 610 CDD PAL-HAL 51 420 IPR001106 -
Tan04g0612 610 Gene3D Fumarase/aspartase (Central domain) 157 605 - -
Tan04g0612 610 Pfam Aromatic amino acid lyase 49 435 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0612 Tan-Chr4:5167652 Tan05g0231 Tan-Chr5:1770630 7.50E-274 dispersed
Tan11g0873 Tan-Chr11:7147840 Tan04g0612 Tan-Chr4:5167652 1.00E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0612 K10775 - rcu:8273543 989.178