Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0628 ATGGGTCCGTCGGAGAAGGAGATGAAAGACATGGTGGTGAGTCAACTGGCTGAGTCTGTGAAGGAGATTTCGGGGCTTCCCGAGTGTAACGGCATCTGTAAGAAGATGTGTGGGGATTTGATTCGAAGGGTCAAGCTCTTAAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGAAGAACTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTACAAAGCTTCTTAGGTCGGTCAGCCAAGGTAGCAAGCTATTTCAGGCTTCACAGATAGAGAAGTTTGTACTTGAGTTTCGTCATATGACAGAAGATATTGAAGCAGCACTCAACAAGCTTCCCATTGACAAGCTCGGGATCTCGGATGAGGTTCAAGAACAGACCGAACTTGTTCATGCCCAATTCAAACGAGCAAAAGAGAGAGTAGGTTCAGCTGATGCACAGTTAGACGAGGATTTAGCCATATTAGAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTAGTGATCTCAAACGATGGAGGAGACCCAGGGGATGTTTTTGGAAAAATGTCATCCATTTTAAAGAAGCTGAAGGATTTTATACAATCAGAAAACCCAGAAGTTGAAACCTCTCAAGATGAAAAAAGTACAACCATTAAACACAGATCTCCCGTCATCCCAGACGATTTTAGGTGCCCCATATCTCTCGAATTGATGAGGGATCCCGTCATCGTCTCCACTGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTATGTTTTGAAGAGCCTGATTTCTTTGTGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAGCAAGAAACCTGGAAGCAGTATTTCAGACTGCGATCGGTCTGCCATCGACACCTTACTCCTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGATTACTTGCAAAGAGGAATTCGGATAACAGAATTTGTATCGCTGAGGCAGGAGCCATTCCGTTCCTCGTCGAACTATTATCCTCAAATGATACTAGGACCCAGGAGCATGCAGTTACAGCACTATTGAATCTATCAATCAACGACAGTAATAAAAGAACAATCGTCGATCTTCGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAAAATGCAGCGGCAACCCTTTTCAGTTTATCCGTAATAGATGAGAACAAGGTCGCGATCGGAGCAGCTGGGGCAATTCCTGCTCTCATAAGTTTGCTTTGTGAAGGTACACCCAGAGGAAAGAAGGATGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGGGCAGTAAGAGCAGGCATTGTGACTCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAAGTCACCATGAAGGAAAGATGGCGATAGGGCAAGCCGAGCCAATGGTGGTTCTACTGGAGTTCATCAGAACTGGTTCTCCACGCAACCGGGAAAATGCTGCTGCCGTGCTGTGGTCGCTTTGCAGTACCGATATCGAGCAGTTGAAGCTAGCTAGGGAACATGGTGCATTAGAGGCATTGAAAGAAGTATCAGAAAATGGCACAGATAGAGCAAAGAGGAAAGCAGTAAGCATTCTAGAGCTCTTTCAACGCTTCGATGGACAATCTGCAAATCTATAA 1896 44.83 MGPSEKEMKDMVVSQLAESVKEISGLPECNGICKKMCGDLIRRVKLLSPLFEELRDGEEELGLDVLKGLELLKIALDSATKLLRSVSQGSKLFQASQIEKFVLEFRHMTEDIEAALNKLPIDKLGISDEVQEQTELVHAQFKRAKERVGSADAQLDEDLAILEEEKDPDPAILKRVSEKLHLRTINDLKKESLAIHELVISNDGGDPGDVFGKMSSILKKLKDFIQSENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLISLWCENNGVELPRKQGSCRSKKPGSSISDCDRSAIDTLLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLMGFLKDAGGGMVDEALAILAILASHHEGKMAIGQAEPMVVLLEFIRTGSPRNRENAAAVLWSLCSTDIEQLKLAREHGALEALKEVSENGTDRAKRKAVSILELFQRFDGQSANL 631
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 5304952 5308328 + Tan0015641.1 Tan04g0628 749032
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0628 631 CDD MLKL_NTD 33 142 - -
Tan04g0628 631 PANTHER U BOX DOMAIN-CONTAINING 34 623 - -
Tan04g0628 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 SUPERFAMILY RING/U-box 247 324 - -
Tan04g0628 631 ProSiteProfiles U-box domain profile. 249 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0628 631 Pfam U-box domain 250 320 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0628 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 323 IPR013083 -
Tan04g0628 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 FunFam RING-type E3 ubiquitin transferase 250 323 - -
Tan04g0628 631 SUPERFAMILY ARM repeat 344 621 IPR016024 -
Tan04g0628 631 Gene3D - 333 623 IPR011989 -
Tan04g0628 631 FunFam RING-type E3 ubiquitin transferase 332 627 - -
Tan04g0628 631 FunFam RING-type E3 ubiquitin transferase 9 122 - -
Tan04g0628 631 Gene3D - 9 122 IPR036537 GO:0007166(InterPro)
Tan04g0628 631 CDD RING-Ubox_PUB 251 303 IPR045210 -
Tan04g0628 631 SMART Ubox_2 253 316 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0628 631 SMART arm_5 418 458 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 SMART arm_5 377 417 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 SMART arm_5 541 581 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 SMART arm_5 500 540 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 SMART arm_5 459 499 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 Pfam Armadillo/beta-catenin-like repeat 418 457 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 Pfam Armadillo/beta-catenin-like repeat 377 416 IPR000225 GO:0005515(InterPro)
Tan04g0628 631 Pfam Armadillo/beta-catenin-like repeat 460 498 IPR000225 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0077 Tan-Chr4:570901 Tan04g0628 Tan-Chr4:5304952 2.30E-27 dispersed
Tan04g0628 Tan-Chr4:5304952 Tan05g0378 Tan-Chr5:2751092 4.60E-125 dispersed
Tan10g0424 Tan-Chr10:3409047 Tan04g0628 Tan-Chr4:5304952 1.80E-13 dispersed
Tan11g0585 Tan-Chr11:5210158 Tan04g0628 Tan-Chr4:5304952 7.30E-10 dispersed
Tan04g0628 Tan-Chr4:5304952 Tan05g0377 Tan-Chr5:2751092 4.60E-125 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0628 K27628 - csv:101221065 1056.97