Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0628 | ATGGGTCCGTCGGAGAAGGAGATGAAAGACATGGTGGTGAGTCAACTGGCTGAGTCTGTGAAGGAGATTTCGGGGCTTCCCGAGTGTAACGGCATCTGTAAGAAGATGTGTGGGGATTTGATTCGAAGGGTCAAGCTCTTAAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGAAGAACTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTACAAAGCTTCTTAGGTCGGTCAGCCAAGGTAGCAAGCTATTTCAGGCTTCACAGATAGAGAAGTTTGTACTTGAGTTTCGTCATATGACAGAAGATATTGAAGCAGCACTCAACAAGCTTCCCATTGACAAGCTCGGGATCTCGGATGAGGTTCAAGAACAGACCGAACTTGTTCATGCCCAATTCAAACGAGCAAAAGAGAGAGTAGGTTCAGCTGATGCACAGTTAGACGAGGATTTAGCCATATTAGAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTAGTGATCTCAAACGATGGAGGAGACCCAGGGGATGTTTTTGGAAAAATGTCATCCATTTTAAAGAAGCTGAAGGATTTTATACAATCAGAAAACCCAGAAGTTGAAACCTCTCAAGATGAAAAAAGTACAACCATTAAACACAGATCTCCCGTCATCCCAGACGATTTTAGGTGCCCCATATCTCTCGAATTGATGAGGGATCCCGTCATCGTCTCCACTGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTATGTTTTGAAGAGCCTGATTTCTTTGTGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAGCAAGAAACCTGGAAGCAGTATTTCAGACTGCGATCGGTCTGCCATCGACACCTTACTCCTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGATTACTTGCAAAGAGGAATTCGGATAACAGAATTTGTATCGCTGAGGCAGGAGCCATTCCGTTCCTCGTCGAACTATTATCCTCAAATGATACTAGGACCCAGGAGCATGCAGTTACAGCACTATTGAATCTATCAATCAACGACAGTAATAAAAGAACAATCGTCGATCTTCGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAAAATGCAGCGGCAACCCTTTTCAGTTTATCCGTAATAGATGAGAACAAGGTCGCGATCGGAGCAGCTGGGGCAATTCCTGCTCTCATAAGTTTGCTTTGTGAAGGTACACCCAGAGGAAAGAAGGATGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGGGCAGTAAGAGCAGGCATTGTGACTCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAAGTCACCATGAAGGAAAGATGGCGATAGGGCAAGCCGAGCCAATGGTGGTTCTACTGGAGTTCATCAGAACTGGTTCTCCACGCAACCGGGAAAATGCTGCTGCCGTGCTGTGGTCGCTTTGCAGTACCGATATCGAGCAGTTGAAGCTAGCTAGGGAACATGGTGCATTAGAGGCATTGAAAGAAGTATCAGAAAATGGCACAGATAGAGCAAAGAGGAAAGCAGTAAGCATTCTAGAGCTCTTTCAACGCTTCGATGGACAATCTGCAAATCTATAA | 1896 | 44.83 | MGPSEKEMKDMVVSQLAESVKEISGLPECNGICKKMCGDLIRRVKLLSPLFEELRDGEEELGLDVLKGLELLKIALDSATKLLRSVSQGSKLFQASQIEKFVLEFRHMTEDIEAALNKLPIDKLGISDEVQEQTELVHAQFKRAKERVGSADAQLDEDLAILEEEKDPDPAILKRVSEKLHLRTINDLKKESLAIHELVISNDGGDPGDVFGKMSSILKKLKDFIQSENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLISLWCENNGVELPRKQGSCRSKKPGSSISDCDRSAIDTLLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLMGFLKDAGGGMVDEALAILAILASHHEGKMAIGQAEPMVVLLEFIRTGSPRNRENAAAVLWSLCSTDIEQLKLAREHGALEALKEVSENGTDRAKRKAVSILELFQRFDGQSANL | 631 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5304952 | 5308328 | + | Tan0015641.1 | Tan04g0628 | 749032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0628 | 631 | CDD | MLKL_NTD | 33 | 142 | - | - | |
Tan04g0628 | 631 | PANTHER | U BOX DOMAIN-CONTAINING | 34 | 623 | - | - | |
Tan04g0628 | 631 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 429 | 471 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | SUPERFAMILY | RING/U-box | 247 | 324 | - | - | |
Tan04g0628 | 631 | ProSiteProfiles | U-box domain profile. | 249 | 323 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan04g0628 | 631 | Pfam | U-box domain | 250 | 320 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan04g0628 | 631 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 323 | IPR013083 | - | |
Tan04g0628 | 631 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 388 | 430 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | FunFam | RING-type E3 ubiquitin transferase | 250 | 323 | - | - | |
Tan04g0628 | 631 | SUPERFAMILY | ARM repeat | 344 | 621 | IPR016024 | - | |
Tan04g0628 | 631 | Gene3D | - | 333 | 623 | IPR011989 | - | |
Tan04g0628 | 631 | FunFam | RING-type E3 ubiquitin transferase | 332 | 627 | - | - | |
Tan04g0628 | 631 | FunFam | RING-type E3 ubiquitin transferase | 9 | 122 | - | - | |
Tan04g0628 | 631 | Gene3D | - | 9 | 122 | IPR036537 | GO:0007166(InterPro) | |
Tan04g0628 | 631 | CDD | RING-Ubox_PUB | 251 | 303 | IPR045210 | - | |
Tan04g0628 | 631 | SMART | Ubox_2 | 253 | 316 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan04g0628 | 631 | SMART | arm_5 | 418 | 458 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | SMART | arm_5 | 377 | 417 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | SMART | arm_5 | 541 | 581 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | SMART | arm_5 | 500 | 540 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | SMART | arm_5 | 459 | 499 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 418 | 457 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 377 | 416 | IPR000225 | GO:0005515(InterPro) | |
Tan04g0628 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 460 | 498 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0077 | Tan-Chr4:570901 | Tan04g0628 | Tan-Chr4:5304952 | 2.30E-27 | dispersed | |
Tan04g0628 | Tan-Chr4:5304952 | Tan05g0378 | Tan-Chr5:2751092 | 4.60E-125 | dispersed | |
Tan10g0424 | Tan-Chr10:3409047 | Tan04g0628 | Tan-Chr4:5304952 | 1.80E-13 | dispersed | |
Tan11g0585 | Tan-Chr11:5210158 | Tan04g0628 | Tan-Chr4:5304952 | 7.30E-10 | dispersed | |
Tan04g0628 | Tan-Chr4:5304952 | Tan05g0377 | Tan-Chr5:2751092 | 4.60E-125 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0628 | K27628 | - | csv:101221065 | 1056.97 |