Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0640 ATGTTTCCTCTTCTTAGCATTCTCTTGATATGGATGTTTGGTTCAATCTTTCTTGTCGCCTCGGCTTCCTTCAATCTGACATTGCCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGAGAGTCAATGCATCTCTATGGAGAAGACAAATGCTATCCTTCGAATCGAAGGATCAAGTTTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGATGCGACCCAAATTGGGCGGCAAACCGGCAGAGACTCGCCGACTGCGGCATCGGGTTCGGCCGCGACGCCATCGGCGGCAAAGGCGGCAAGATCTATATCGTCACCGACTCCTCCGATTCCGATCCGGCGAACCCAACTCCGGGGACTCTCCGCCACGCCGTGATCCAATTCGAACCACTCTGGATCATCTTCTCCGCCGACATGACCATCACGCTCAAATATGAACTCATCATTAACAGCTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGTTGCATCACCATCCAATACGTGTCCAATATCATCATCCACAACATCCACGTGCATCACTGTAAACCATCTGGCAATGCCAACATAAGGTCAACCCCGACTCACGTGGGGCACCGGGGGTTATCGGACGGGGACGGGATCTCGATATTCAGCTCGAGAAAGATCTGGATCGACCACTGCTCGCTATCGTACTGCACAGACGGGCTAATAGACGCGATAATGGGATCGACAGGGATAACAATATCGAATAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCACGACGACCGGTACGTGCTGGACTCAGGGATGCAGGTGACAATAGCCTTCAACCACTTCGGCGAGGCTCTGGTCCAGCGCATGCCCCGCTGCAGACATGGCTACATTCATGTCGTTAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGCGCTCGACCCACTATTAACAGTCAGGGTAACCGTTATACGGCTCCTGTGGACCCTAATGCCAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGATATTTTGATGAACGGCGCGTTTTTTGTGCCGTCCGGCGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTTGAGCCGAAGTCGGTTGCTCTTATCAATCAACTCACTATGAACGCCGGCGTTTTAGGGGCCCCCAGGTATAATAACGGTGAAGGGATTGTATATCCAGGATTTAGTAATGGTGGGAATGGCGATGGCGGATACAGTGGCAACACTGTAATTAATAATAGTCCAATTTATGGAAATAATGGTGGCAATGATGATGATTTCTACGGAATGATATTTAAAGCTTCGGGTTATACAGTATCGCCATCCATAAACTTGTGTATTCAAATTATATTAGTTTTGTACATAGTAATAAATTTATATAGTGGTCTATTGACATTATAG 1497 50.9 MFPLLSILLIWMFGSIFLVASASFNLTLPHQHPDPDSVADELQRRVNASLWRRQMLSFESKDQVFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAIGGKGGKIYIVTDSSDSDPANPTPGTLRHAVIQFEPLWIIFSADMTITLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVLDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILMNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNNGEGIVYPGFSNGGNGDGGYSGNTVINNSPIYGNNGGNDDDFYGMIFKASGYTVSPSINLCIQIILVLYIVINLYSGLLTL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5408393 5416662 - Tan0003888.1 Tan04g0640 749044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0640 498 Pfam Pectate lyase 155 331 IPR002022 -
Tan04g0640 498 PANTHER PECTATE LYASE 18-RELATED 17 413 IPR045032 GO:0030570(InterPro)
Tan04g0640 498 Gene3D - 70 412 IPR012334 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Tan04g0640 498 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Tan04g0640 498 SUPERFAMILY Pectin lyase-like 60 389 IPR011050 -
Tan04g0640 498 SMART amb_all 145 342 IPR002022 -
Tan04g0640 498 FunFam Pectate lyase 70 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1118 Tan-Chr3:67304374 Tan04g0640 Tan-Chr4:5408393 7.70E-181 dispersed
Tan04g0640 Tan-Chr4:5408393 Tan06g2325 Tan-Chr6:74602422 3.40E-155 dispersed
Tan04g0640 Tan-Chr4:5408393 Tan04g0641 Tan-Chr4:5411468 2.50E-251 tandem
Tan11g0926 Tan-Chr11:7527333 Tan04g0640 Tan-Chr4:5408393 3.50E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0640 K01728 - csv:101205739 873.618