Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0641 | ATGTTTCCTCTTCTTAGCATTCTCTTGATATGGATGTTTGGTTCAATCTTTCTTGTCGCCTCGGCTTCCTTCAATCTGACATTGCCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGAGAGTCAATGCATCTCTATGGAGAAGACAAATGCTATCCTTCGAATCGAAGGATCAAGTTTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGATGCGACCCAAATTGGGCGGCAAACCGGCAGAGACTCGCCGACTGCGGCATCGGGTTCGGCCGCGACGCCATCGGCGGCAAAGGCGGCAAGATCTATATCGTCACCGACTCCTCCGATTCCGATCCGGCGAACCCAACTCCGGGGACTCTCCGCCACGCCGTGATCCAATTCGAACCACTCTGGATCATCTTCTCCGCCGACATGACCATCACGCTCAAATATGAACTCATCATTAACAGCTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGTTGCATCACCATCCAATACGTGTCCAATATCATCATCCACAACATCCACGTGCATCACTGTAAACCATCTGGCAATGCCAACATAAGGTCAACCCCGACTCACGTGGGGCACCGGGGGTTATCGGACGGGGACGGGATCTCGATATTCAGCTCGAGAAAGATCTGGATCGACCACTGCTCGCTATCGTACTGCACAGACGGGCTAATAGACGCGATAATGGGATCGACAGGGATAACAATATCGAATAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCACGACGACCGGTACGTGCTGGACTCAGGGATGCAGGTGACAATAGCCTTCAACCACTTCGGCGAGGCTCTGGTCCAGCGCATGCCCCGCTGCAGACATGGCTACATTCATGTCGTTAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGCGCTCGACCCACTATTAACAGTCAGGGTAACCGTTATACGGCTCCTGTGGACCCTAATGCCAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGATATTTTGATGAACGGCGCGTTTTTTGTGCCGTCCGGCGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTTGAGCCGAAGTCGGTTGCTCTTATCAATCAACTCACTATGAACGCCGGCGTTTTAGGGGCCCCCAGGTAA | 1248 | 54.49 | MFPLLSILLIWMFGSIFLVASASFNLTLPHQHPDPDSVADELQRRVNASLWRRQMLSFESKDQVFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAIGGKGGKIYIVTDSSDSDPANPTPGTLRHAVIQFEPLWIIFSADMTITLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVLDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILMNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPR | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5411468 | 5416662 | - | Tan0003888.2 | Tan04g0641 | 749045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0641 | 415 | Gene3D | - | 70 | 412 | IPR012334 | - | |
Tan04g0641 | 415 | FunFam | Pectate lyase | 70 | 412 | - | - | |
Tan04g0641 | 415 | PANTHER | PECTATE LYASE 18-RELATED | 17 | 412 | IPR045032 | GO:0030570(InterPro) | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 117 | 142 | IPR018082 | - | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 153 | 169 | IPR018082 | - | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 217 | 238 | IPR018082 | - | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 361 | 385 | IPR018082 | - | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 297 | 316 | IPR018082 | - | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 390 | 413 | IPR018082 | - | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 93 | 110 | IPR018082 | - | |
Tan04g0641 | 415 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Tan04g0641 | 415 | SUPERFAMILY | Pectin lyase-like | 60 | 388 | IPR011050 | - | |
Tan04g0641 | 415 | SMART | amb_all | 145 | 342 | IPR002022 | - | |
Tan04g0641 | 415 | Pfam | Pectate lyase | 155 | 331 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0641 | Tan-Chr4:5411468 | Tan11g0926 | Tan-Chr11:7527333 | 1.40E-191 | dispersed | |
Tan04g0640 | Tan-Chr4:5408393 | Tan04g0641 | Tan-Chr4:5411468 | 2.50E-251 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0641 | K01728 | - | csv:101205739 | 804.668 |