Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0641 ATGTTTCCTCTTCTTAGCATTCTCTTGATATGGATGTTTGGTTCAATCTTTCTTGTCGCCTCGGCTTCCTTCAATCTGACATTGCCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGAGAGTCAATGCATCTCTATGGAGAAGACAAATGCTATCCTTCGAATCGAAGGATCAAGTTTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGATGCGACCCAAATTGGGCGGCAAACCGGCAGAGACTCGCCGACTGCGGCATCGGGTTCGGCCGCGACGCCATCGGCGGCAAAGGCGGCAAGATCTATATCGTCACCGACTCCTCCGATTCCGATCCGGCGAACCCAACTCCGGGGACTCTCCGCCACGCCGTGATCCAATTCGAACCACTCTGGATCATCTTCTCCGCCGACATGACCATCACGCTCAAATATGAACTCATCATTAACAGCTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGTTGCATCACCATCCAATACGTGTCCAATATCATCATCCACAACATCCACGTGCATCACTGTAAACCATCTGGCAATGCCAACATAAGGTCAACCCCGACTCACGTGGGGCACCGGGGGTTATCGGACGGGGACGGGATCTCGATATTCAGCTCGAGAAAGATCTGGATCGACCACTGCTCGCTATCGTACTGCACAGACGGGCTAATAGACGCGATAATGGGATCGACAGGGATAACAATATCGAATAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCACGACGACCGGTACGTGCTGGACTCAGGGATGCAGGTGACAATAGCCTTCAACCACTTCGGCGAGGCTCTGGTCCAGCGCATGCCCCGCTGCAGACATGGCTACATTCATGTCGTTAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGCGCTCGACCCACTATTAACAGTCAGGGTAACCGTTATACGGCTCCTGTGGACCCTAATGCCAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGATATTTTGATGAACGGCGCGTTTTTTGTGCCGTCCGGCGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTTGAGCCGAAGTCGGTTGCTCTTATCAATCAACTCACTATGAACGCCGGCGTTTTAGGGGCCCCCAGGTAA 1248 54.49 MFPLLSILLIWMFGSIFLVASASFNLTLPHQHPDPDSVADELQRRVNASLWRRQMLSFESKDQVFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAIGGKGGKIYIVTDSSDSDPANPTPGTLRHAVIQFEPLWIIFSADMTITLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVLDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILMNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPR 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5411468 5416662 - Tan0003888.2 Tan04g0641 749045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0641 415 Gene3D - 70 412 IPR012334 -
Tan04g0641 415 FunFam Pectate lyase 70 412 - -
Tan04g0641 415 PANTHER PECTATE LYASE 18-RELATED 17 412 IPR045032 GO:0030570(InterPro)
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Tan04g0641 415 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Tan04g0641 415 SUPERFAMILY Pectin lyase-like 60 388 IPR011050 -
Tan04g0641 415 SMART amb_all 145 342 IPR002022 -
Tan04g0641 415 Pfam Pectate lyase 155 331 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0641 Tan-Chr4:5411468 Tan11g0926 Tan-Chr11:7527333 1.40E-191 dispersed
Tan04g0640 Tan-Chr4:5408393 Tan04g0641 Tan-Chr4:5411468 2.50E-251 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0641 K01728 - csv:101205739 804.668