Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0666 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGGTGATTCAGAATCAGGGCAACGCTTCTAATGGCAGCAATGTTCAGAGATCCAAGAGCTTTGCGTTTCGGGCTCCTCAGGAGAATTTTACTATCCAGGATTTTGAATTGGGAAAAATATATGGCGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACAGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCCTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGAAAAGGTCGTCTATCAGAGGATGAAGCTCGGTTTTATGCTGCAGAAGTCATCGATGCTCTTGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAGAACTTGCTGCTTACTACTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGATAGTCGAATTACCGTGCTTCCGAATGCAGCGTCAGATGATAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTTCTTAATTCCTCCCCTGCAACTTTTGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAAGATGCAAGCGAATGGCTTATTTTTCAAAAAATCGTAGCGCGAGATATAAAATTCCCCAGCTATTTTTCAGAGCAGGCCAGGGATCTTATCGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCTGAGGGTTATGCTTCTCTCAAGAGTCATCCCTTCTTTGAGGGGGTTGATTGGAAGAACATAAGAGCACAAACCCCTCCCAGGCTTGCTCTAGAAGCAGTGCCTCATTCAATTGAGAACGATGATAGCTCCGAGTCCTCTTGGAATCCTTCACATGTCGGAGATGGTGCACCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCCGATGGATCGCATCATATTACTCGGCTCGCATCGATAGACTCCTTCGATTCAAAATGGCAACAATTCCTTGAACCTGGAGAATCTGTTCTTATGATTTCAATGGTGAAAAAACTTCAGAAAATAACAAGCAAAAAGGTTCAGCTCATCCTCACTAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAACATCATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAAAAGATAGCCTCTTTCGAGGATGCGAAACAGCGAGCATGGCAATGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1476 42.89 MLAMEKDFDAKLVIQNQGNASNGSNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVIDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYASLKSHPFFEGVDWKNIRAQTPPRLALEAVPHSIENDDSSESSWNPSHVGDGAPRQNDGNAGSASTSDGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5690139 5695918 + Tan0009113.1 Tan04g0666 749070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0666 491 CDD STKc_PDK1 44 313 IPR039046 GO:0004674(InterPro)
Tan04g0666 491 SUPERFAMILY PH domain-like 307 490 - -
Tan04g0666 491 Gene3D - 361 491 IPR011993 -
Tan04g0666 491 SUPERFAMILY Protein kinase-like (PK-like) 43 375 IPR011009 -
Tan04g0666 491 Pfam Protein kinase domain 47 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0666 491 MobiDBLite consensus disorder prediction 340 354 - -
Tan04g0666 491 FunFam 3-phosphoinositide-dependent protein kinase 1 361 491 - -
Tan04g0666 491 MobiDBLite consensus disorder prediction 338 374 - -
Tan04g0666 491 Gene3D Transferase(Phosphotransferase) domain 1 130 325 - -
Tan04g0666 491 ProSiteProfiles Protein kinase domain profile. 46 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0666 491 SMART serkin_6 46 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0666 491 Coils Coil 471 491 - -
Tan04g0666 491 FunFam 3-phosphoinositide-dependent protein kinase 2-like 44 129 - -
Tan04g0666 491 Gene3D Phosphorylase Kinase; domain 1 44 129 - -
Tan04g0666 491 Pfam PH domain 388 490 IPR033931 -
Tan04g0666 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0666 491 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 344 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Tan04g0666 491 FunFam 3-phosphoinositide-dependent protein kinase 2-like 130 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0666 Tan-Chr4:5690139 Tan09g2184 Tan-Chr9:71899468 6.60E-55 dispersed
Tan09g1986 Tan-Chr9:70627371 Tan04g0666 Tan-Chr4:5690139 2.80E-07 dispersed
Tan04g0666 Tan-Chr4:5690139 Tan02g0526 Tan-Chr2:4728862 2.30E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67427 PF00069 Pkinase 3.50E-65 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0666 K06276 - csv:101212874 925.235