Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0685 ATGGAGCAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTTGTTTACAAGGCACGCGACCGTGTCACAAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAGGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCACTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTACAAGATGTAGTGCATAGCGAGAAGCGCCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCACATGGACTCATCTCCTGAATTTGCAAAGGATCCACGGCAAGTAAAGATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGTCATTCTCATAGAGTTCTTCATCGAGATCTAAAACCCCAAAATCTACTGATAGATCGTCGTACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTTACCCATGAGGTGGTGACGCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACTCCCGTGGATGTTTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCATTATTCCCTGGGGACTCCGAGATTGATGAATTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAGTCTGCTTTCCCCAAGTGGCCTTCTAAGGATCTGGCTTCTGTAGTTCCAAATCTTGAATCCGCTGGCATTGATCTTCTCTCTAAAATGCTCTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAGTGCCCTTGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA 885 43.73 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKDLASVVPNLESAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGFVP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5949937 5955290 + Tan0012009.1 Tan04g0685 749089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0685 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0685 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Tan04g0685 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0685 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0685 294 FunFam Cell division control protein 2 homolog 86 292 - -
Tan04g0685 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Tan04g0685 294 SMART serkin_6 4 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0685 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Tan04g0685 294 PANTHER CELL DIVISION PROTEIN KINASE 3 287 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)|GO:0051445(PANTHER)
Tan04g0685 294 FunFam Cell division control protein 2 1 84 - -
Tan04g0685 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Tan04g0685 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2264 Tan-Chr1:26900427 Tan04g0685 Tan-Chr4:5949937 1.40E-58 dispersed
Tan03g0660 Tan-Chr3:62119840 Tan04g0685 Tan-Chr4:5949937 2.00E-94 dispersed
Tan04g0685 Tan-Chr4:5949937 Tan09g1847 Tan-Chr9:69813272 7.70E-75 dispersed
Tan09g1833 Tan-Chr9:69723447 Tan04g0685 Tan-Chr4:5949937 2.40E-44 dispersed
Tan04g0685 Tan-Chr4:5949937 Tan04g0686 Tan-Chr4:5949937 5.20E-172 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67428 PF00069 Pkinase 5.00E-81 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0685 K02206 - csv:116405161 586.26