Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0744 ATGAACTCAGTTCCGTTCATTTTCCTTCTCATTCTTTGCCTCCGACTCGCCGGAGCTTCCGATTCTCCTCCTCCGTCCGCCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCCATCCGCTTCTCCCCTTCAGATCCCTACGGCTACGGAAAATTCTCCGTCAAGAAGTGCCTCAAACAGGCGATCAAAATGTCGAGCGTAATCAGCCACTATCTCGACGGAGGAGGCGATTCGAGGCTGAATCGGCAGGAGGCCGGCGCTCTGGAAGATTGCAAAGAGCTTTCCGATTCGAATGTGGAGTTTCTCCGGTCGATTGAGGTCGTGTTGGAGGCGGCGGGGGGAGTGGATGAGGAACTGGTAGAGCGAGTTGAGAGTATTTTGAGCGCGATCGTGACGAACGGACAGACTTGTATCGACGGATTGATGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGTCGAGCGCGGGGGAGCTGTACAGTGTGTCGTTGGGATTGGTTACGAACTCGCTGTCGCGACGGTGGAAGAAGCGGCGGAAGAATGGAGACGGCGAGGGAGGGAAGTTTCCGGCAGGCGCGCGGAACAGAGAGCCACTGAACACGCTGATCAAGGGACTACATAAAATGGGATCATGCAACCAATCCACAATCTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCACCACAGGAATCTTCATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCAGACAACTTCACATCCATTGGAGATGCCATTGCATTTGCTCCCAACAATTCAATGCCTGAAGATGGCTACTTTGTTATCTATGTTAGACAAGGATACTACCAAGAATACATCGTCGTCCCCAAATATAAAACCAACATAATGCTCATAGGAGATGGCATTAACCGAACCGTCGTCACCGGGAACCATAGTGTCGTCGATGGTTGGACGACTTATAATTCTTCTACGTTTACTGTTTGTGGGGATGGATTTGTTGCAATAGATGTGACATTTAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTGGCAGTAAGGAACAGTGCAGATCTCTCAACATTCTACCGCTGCAGTTTCGAGGGCTATCAAGACACTCTCTACGTACATTCCTTAAGACAATTCTACAGAGAATGCGACATTTACGGCACAGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAAAAATGCAATCTATACGCCAGAAAGCCACTCCCCAACCAAAAGATTGCTTTCACGGCGCAGGGCCGAACCGATCCGAACCAAAACACAGGCATCTCGATCCACAACTGCACGATCAAGGCTGCTCCCGACTGGGAGACGGTTAATTCAAACTCGACGATGACGAACTATCTCGGGCGACCGTGGAAGCAGTACTCAAGGACAGTGTATATGCAGTCCTATATTGGGGATTTGATCAGCCCTATGGGATGGTTGGAGTGGAATGGAACAGCAAGTTTGGACACATTGTATTATGGGGAGTTTGAGAATTATGGGCCAGGAGCTAACACAAGCATGAGGGTGGATTGGCCTGGCTATAGCTTGATGAATATTACACAGGCTATGAATTTTACTGTCTATAACTTTACTATGGGAGATACTTGGCTGCCTTATACTGATATTCCTTTCTCTGGAGGTTTGCTATGA 1695 49.26 MNSVPFIFLLILCLRLAGASDSPPPSAALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVISHYLDGGGDSRLNRQEAGALEDCKELSDSNVEFLRSIEVVLEAAGGVDEELVERVESILSAIVTNGQTCIDGLMESRSSLGNALSAPLSSAGELYSVSLGLVTNSLSRRWKKRRKNGDGEGGKFPAGARNREPLNTLIKGLHKMGSCNQSTICSGRKRLLTDLGTTGIFINNTVVVSSTGADNFTSIGDAIAFAPNNSMPEDGYFVIYVRQGYYQEYIVVPKYKTNIMLIGDGINRTVVTGNHSVVDGWTTYNSSTFTVCGDGFVAIDVTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQKCNLYARKPLPNQKIAFTAQGRTDPNQNTGISIHNCTIKAAPDWETVNSNSTMTNYLGRPWKQYSRTVYMQSYIGDLISPMGWLEWNGTASLDTLYYGEFENYGPGANTSMRVDWPGYSLMNITQAMNFTVYNFTMGDTWLPYTDIPFSGGLL 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6425214 6433384 - Tan0005510.1 Tan04g0744 749148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0744 564 CDD PMEI-like_3 28 179 - -
Tan04g0744 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Tan04g0744 564 SUPERFAMILY Pectin lyase-like 244 562 IPR011050 -
Tan04g0744 564 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Tan04g0744 564 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857(InterPro)
Tan04g0744 564 Gene3D - 243 563 IPR012334 -
Tan04g0744 564 FunFam Pectinesterase 243 563 - -
Tan04g0744 564 PANTHER PECTINESTERASE 9 553 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan04g0744 564 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Tan04g0744 564 Pfam Pectinesterase 249 549 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan04g0744 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0744 Tan-Chr4:6425214 Tan07g0985 Tan-Chr7:23190646 8.30E-118 dispersed
Tan04g0744 Tan-Chr4:6425214 Tan06g0778 Tan-Chr6:6097598 4.80E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0744 K01051 - csv:101206112 1001.5