Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0745 | ATGAGAATCTTTCCGCCTGCTTCTTCTTGCTCTTCCTCTTCCTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAATAACAGCAACAATCTCTCCGCTCCTCACCGCCCGCAATCGGAGAAAACCAGAGCCAAACGGCGGCGGAGGAATCAGGACGAATCGAAATGCGAGATTCACAATCGCAACACCAACGGAATCATCAACAACAACGCCTCTTCCGCTCGTCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCGTGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTTTATTTGGGAGCTTACGATAACGAGGAAGCCGCGGCGCGAACTTATGACCTCGCTGCCCTCAAATACTGGGGACCCGGAACCACCCTCAATTTCCCGGCAGAATCGTACACGAATGAAATGGAAGAAATGCGGAAAGTAACGAAGGAGGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGTGGATTTTCGAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGGCACCACCACAATGGCCGGTGGGAGGCTCGAATTGGCCGTGTTTTTGGAAGCAAATATCTCTACTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAATACAGAGGAGCCAATGCAGTTACAAACTTTGACATTAGCAATTACATTGGGAGGTTAGAGAATAAATCATCAGTTTTTCAAGCAGAGCAACCAGAAGAGGAGCCCAATTACTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAACAGCAACAACAACTACAACAACAAACTACATTTTCGGGCCTGTCAGGCCTTGAGTTCTCGTCGACGCTACCGTCGATTGAGAACAACGGTGTCATGGAGGAGCCTACACAAGACGATCATGATCTACATTGGTCTTTCTTGGACACGGGATTCGTCGAGGTCCCTGACCTCCCACTCGAGAAATCAAGCGAGTTGGCCGACCTCTACTTCGACGAGATCGGATTCGAGGATGACATCGGGTTGATATTCGAAGCGAGCTTAGAGAACAAGAGCATTGAGGGTAATAGTAAAGAAGATGAAAATGTTGGGAAGATGGAGATGAACAATGAGAAAATGAGATTGTTGTCAACAACTTCACCATCTTCTTCATCAATAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA | 1239 | 48.83 | MRIFPPASSCSSSSSSCVGSDSGIHNNSNNLSAPHRPQSEKTRAKRRRRNQDESKCEIHNRNTNGIINNNASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPAESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSVFQAEQPEEEPNYSPASSEGEVVQQQQQLQQQTTFSGLSGLEFSSTLPSIENNGVMEEPTQDDHDLHWSFLDTGFVEVPDLPLEKSSELADLYFDEIGFEDDIGLIFEASLENKSIEGNSKEDENVGKMEMNNEKMRLLSTTSPSSSSIITTSVSCEFRV | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6442026 | 6446058 | - | Tan0021535.1 | Tan04g0745 | 749149 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0745 | 412 | Gene3D | AP2/ERF domain | 79 | 147 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | Gene3D | AP2/ERF domain | 180 | 241 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | FunFam | AP2-like ethylene-responsive transcription factor | 180 | 241 | - | - | |
Tan04g0745 | 412 | SUPERFAMILY | DNA-binding domain | 78 | 146 | IPR016177 | GO:0003677(InterPro) | |
Tan04g0745 | 412 | PRINTS | Ethylene responsive element binding protein signature | 221 | 241 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | PRINTS | Ethylene responsive element binding protein signature | 80 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | CDD | AP2 | 78 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Tan04g0745 | 412 | MobiDBLite | consensus disorder prediction | 255 | 283 | - | - | |
Tan04g0745 | 412 | FunFam | AP2-like ethylene-responsive transcription factor | 78 | 147 | - | - | |
Tan04g0745 | 412 | ProSiteProfiles | AP2/ERF domain profile. | 79 | 145 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 50 | 277 | - | - | |
Tan04g0745 | 412 | Pfam | AP2 domain | 80 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | Pfam | AP2 domain | 180 | 231 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Tan04g0745 | 412 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | - | - | |
Tan04g0745 | 412 | SMART | rav1_2 | 79 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | SMART | rav1_2 | 181 | 245 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | MobiDBLite | consensus disorder prediction | 45 | 59 | - | - | |
Tan04g0745 | 412 | CDD | AP2 | 180 | 241 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0745 | 412 | SUPERFAMILY | DNA-binding domain | 180 | 241 | IPR016177 | GO:0003677(InterPro) | |
Tan04g0745 | 412 | ProSiteProfiles | AP2/ERF domain profile. | 181 | 239 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0745 | Tan-Chr4:6442026 | Tan09g1597 | Tan-Chr9:67738656 | 1.00E-77 | dispersed | |
Tan04g0745 | Tan-Chr4:6442026 | Tan02g1691 | Tan-Chr2:79514328 | 3.70E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27191 | PF00847 | AP2 | 1.40E-12 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0745 | - | - | - | 0.0 |