Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0745 ATGAGAATCTTTCCGCCTGCTTCTTCTTGCTCTTCCTCTTCCTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAATAACAGCAACAATCTCTCCGCTCCTCACCGCCCGCAATCGGAGAAAACCAGAGCCAAACGGCGGCGGAGGAATCAGGACGAATCGAAATGCGAGATTCACAATCGCAACACCAACGGAATCATCAACAACAACGCCTCTTCCGCTCGTCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCGTGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTTTATTTGGGAGCTTACGATAACGAGGAAGCCGCGGCGCGAACTTATGACCTCGCTGCCCTCAAATACTGGGGACCCGGAACCACCCTCAATTTCCCGGCAGAATCGTACACGAATGAAATGGAAGAAATGCGGAAAGTAACGAAGGAGGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGTGGATTTTCGAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGGCACCACCACAATGGCCGGTGGGAGGCTCGAATTGGCCGTGTTTTTGGAAGCAAATATCTCTACTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAATACAGAGGAGCCAATGCAGTTACAAACTTTGACATTAGCAATTACATTGGGAGGTTAGAGAATAAATCATCAGTTTTTCAAGCAGAGCAACCAGAAGAGGAGCCCAATTACTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAACAGCAACAACAACTACAACAACAAACTACATTTTCGGGCCTGTCAGGCCTTGAGTTCTCGTCGACGCTACCGTCGATTGAGAACAACGGTGTCATGGAGGAGCCTACACAAGACGATCATGATCTACATTGGTCTTTCTTGGACACGGGATTCGTCGAGGTCCCTGACCTCCCACTCGAGAAATCAAGCGAGTTGGCCGACCTCTACTTCGACGAGATCGGATTCGAGGATGACATCGGGTTGATATTCGAAGCGAGCTTAGAGAACAAGAGCATTGAGGGTAATAGTAAAGAAGATGAAAATGTTGGGAAGATGGAGATGAACAATGAGAAAATGAGATTGTTGTCAACAACTTCACCATCTTCTTCATCAATAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1239 48.83 MRIFPPASSCSSSSSSCVGSDSGIHNNSNNLSAPHRPQSEKTRAKRRRRNQDESKCEIHNRNTNGIINNNASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPAESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSVFQAEQPEEEPNYSPASSEGEVVQQQQQLQQQTTFSGLSGLEFSSTLPSIENNGVMEEPTQDDHDLHWSFLDTGFVEVPDLPLEKSSELADLYFDEIGFEDDIGLIFEASLENKSIEGNSKEDENVGKMEMNNEKMRLLSTTSPSSSSIITTSVSCEFRV 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6442026 6446058 - Tan0021535.1 Tan04g0745 749149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0745 412 Gene3D AP2/ERF domain 79 147 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 Gene3D AP2/ERF domain 180 241 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 FunFam AP2-like ethylene-responsive transcription factor 180 241 - -
Tan04g0745 412 SUPERFAMILY DNA-binding domain 78 146 IPR016177 GO:0003677(InterPro)
Tan04g0745 412 PRINTS Ethylene responsive element binding protein signature 221 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 CDD AP2 78 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 MobiDBLite consensus disorder prediction 1 70 - -
Tan04g0745 412 MobiDBLite consensus disorder prediction 255 283 - -
Tan04g0745 412 FunFam AP2-like ethylene-responsive transcription factor 78 147 - -
Tan04g0745 412 ProSiteProfiles AP2/ERF domain profile. 79 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 277 - -
Tan04g0745 412 Pfam AP2 domain 80 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 Pfam AP2 domain 180 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 MobiDBLite consensus disorder prediction 1 37 - -
Tan04g0745 412 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Tan04g0745 412 SMART rav1_2 79 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 SMART rav1_2 181 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 MobiDBLite consensus disorder prediction 45 59 - -
Tan04g0745 412 CDD AP2 180 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0745 412 SUPERFAMILY DNA-binding domain 180 241 IPR016177 GO:0003677(InterPro)
Tan04g0745 412 ProSiteProfiles AP2/ERF domain profile. 181 239 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0745 Tan-Chr4:6442026 Tan09g1597 Tan-Chr9:67738656 1.00E-77 dispersed
Tan04g0745 Tan-Chr4:6442026 Tan02g1691 Tan-Chr2:79514328 3.70E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27191 PF00847 AP2 1.40E-12 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0745 - - - 0.0