Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0796 ATGACCCTCTGCATTAGAGCTTCAAAAGCCATAGCTTCCACAGCTGCTTCATACCCCTTTTCTTTCAAGGTGCGCCTTTTTCTTCCCTTCTCTTCATTGCTCCACTGCACTCTAAGCAACAGCACGGCAACGTTGTCGGAAACTCATTATAGAGACCTTATCTTTGATACAATTGAAGAAAAGCCTTGGGCCTTTTGTAATAACAACTGGGTATCTGATCAATTTGGTGCTGTGATCATCGATCCTCACTTGTTTATTCGAGTCCTTGATTGCATTCGTATCAGACCTAGAGTTGCTTTGCGTTTCTTCCGATGGGTCTTGGTTCAGCCCGATTTTAAGGGTTCAGAATTTGTGTTCTGTGCTATTCTTGATATTCTTGCTCAGAACAATTTGATGAGTTCGGCGTATTGGGTCATGGAGAGGGTGGTAAGCATTGAAATGCGTGGAGTTGTCGATGTTTTAATTGCTGGGCATATGTGTGTAGAAGCTTCCATTAAGCTTCTGGATATTCTGTTATTGATATACACGAAGAAATCAATGGTTGATGAATGCTTGTTGATTTTTGATAAAATGATTCGAAATGGTTTATTGCCTGATGTGAAGAACTGTAATAGGATTCTCAGGGTTCTAAGAGACCAGAATCTCGTGAGTAAAGCTAAAACTGTGTATAGCATGATGGAACAATTTGGGATTAAGCCAACTATTGTCACGTATAATACTATGCTGGATTCCTTTTGCAAGGAGGGGCAAGTACATCAGGCTATAGAGCTTCTATCAGAAATGCAAAAGAGGGGGTGTTTCCCAAATGATGTAACATACAATGTGTTGGTCAATGGGTTGTCGAAGCAAGGAGAGCTTGAACAAGCAAAGGAACTTATTGAGGAGATGTTGAATTCAGGACTCAATGTTTCAGCATATACATATAATCCTTTGATCTATGGTTTTTGCAAGAAAGGATTGTTTGATGAAGCATTTGATCTTGTGGAAGAAATGGTGAATAGAAGAGCTTTCCCTACTTTATCAACTTATAATACACTAATGTACGGCCTTTGCAAGTGGGGGCAAGTGACAGATGCTAGACTTCGGTTTTCTGATATGTTTAAAAGCAATTTTATGCCAGACATAGTTTCGTTCAACATCCTACTTTACGGTTATTGTAGATTTGGGAATATAAGTGAGGCTTTTCTCTTGTTTGATGAATTGAAATGCAGAAATCTCGTTCCGACCGTGGTAACATATAATACCCTTATATATGGTCTTTGTAGTTTGGGTTACTTGGATGTTGCTTTGCGGTTGAAAAAGGAAATGATCGATCAAGGGTTATTCCCTGATATCTTTACATATACTATATTGGTCAATGGATCTTGCAAGATGGGGAATTTGTCAATGGCTAGAGGGTTCTTTGATGAGATGTTGTGTAAAGGGTTGAAGCCTGACCGTTTTGCATATATTACTCGAATAGTAGGAGAAATGAAGCTTGGTGATGCATCCGCTGCATATAGCATGCGAGAAGAAATGTTGGCAGAGGGCTTCCCTCCTGATGTCATCACATACAATGTTTTTGTGCATGGACTTTGTGAACAGGGAAATCTTGAAGAAGCGTGTGATCTGTTAGAGAACATGGTTCATGATGGTCTTGTTCCAGATCATGTGACATATACTAGTATCATTAATGCTTTCATGAAAAACGGGTACTTGAGGAAGGCCAGAGAGGTTTTCAATGAAATGCTCAGCAAGGGGTTAGCCCCTTCTGTAGTAACATATACAGTTCTCATTCATGCACATGCAGCTAAGGGGATGCTGGATCTAGCATTTATGTACTTCTCAAAAATGCTGGAGAAGGGCGTTCCAGCAAACGTAATTACATACAATGCAATAATTAATGGTCTTTGCAAGGTTCGTAGAATGGATGAGGCTTATAAGTATTTTGATGAGATGGAAGAAAAAGGAATTCTACCAAATAAATTTAGTTATACCATATTAATAAATGAGAACTGCAACATGGATTATTGGGAAGAGGCTCTAAGATTGTACAGAGAAATGCTAGATAGAGAAATTCAACCTGATTCTTTTACACATAGTGTGCTTCTAAAGAATCTACGCACGGATTATAAAGAGCATGCACTACAGTGTATAGAGAGTTTGACGGAAAGTGCCAAAGATAATGTAAATGCCAAGTGA 2181 39.06 MTLCIRASKAIASTAASYPFSFKVRLFLPFSSLLHCTLSNSTATLSETHYRDLIFDTIEEKPWAFCNNNWVSDQFGAVIIDPHLFIRVLDCIRIRPRVALRFFRWVLVQPDFKGSEFVFCAILDILAQNNLMSSAYWVMERVVSIEMRGVVDVLIAGHMCVEASIKLLDILLLIYTKKSMVDECLLIFDKMIRNGLLPDVKNCNRILRVLRDQNLVSKAKTVYSMMEQFGIKPTIVTYNTMLDSFCKEGQVHQAIELLSEMQKRGCFPNDVTYNVLVNGLSKQGELEQAKELIEEMLNSGLNVSAYTYNPLIYGFCKKGLFDEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWGQVTDARLRFSDMFKSNFMPDIVSFNILLYGYCRFGNISEAFLLFDELKCRNLVPTVVTYNTLIYGLCSLGYLDVALRLKKEMIDQGLFPDIFTYTILVNGSCKMGNLSMARGFFDEMLCKGLKPDRFAYITRIVGEMKLGDASAAYSMREEMLAEGFPPDVITYNVFVHGLCEQGNLEEACDLLENMVHDGLVPDHVTYTSIINAFMKNGYLRKAREVFNEMLSKGLAPSVVTYTVLIHAHAAKGMLDLAFMYFSKMLEKGVPANVITYNAIINGLCKVRRMDEAYKYFDEMEEKGILPNKFSYTILINENCNMDYWEEALRLYREMLDREIQPDSFTHSVLLKNLRTDYKEHALQCIESLTESAKDNVNAK 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6757275 6761841 + Tan0001193.2 Tan04g0796 749200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Tan04g0796 726 Pfam PPR repeat family 619 667 IPR002885 -
Tan04g0796 726 Pfam PPR repeat family 233 282 IPR002885 -
Tan04g0796 726 Pfam PPR repeat family 305 352 IPR002885 -
Tan04g0796 726 Pfam PPR repeat family 548 596 IPR002885 -
Tan04g0796 726 Pfam PPR repeat family 373 421 IPR002885 -
Tan04g0796 726 Gene3D Tetratricopeptide repeat domain 562 725 IPR011990 GO:0005515(InterPro)
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Tan04g0796 726 FunFam Pentatricopeptide repeat-containing protein At1g09900 227 297 - -
Tan04g0796 726 Gene3D Tetratricopeptide repeat domain 371 492 IPR011990 GO:0005515(InterPro)
Tan04g0796 726 Gene3D Tetratricopeptide repeat domain 493 561 IPR011990 GO:0005515(InterPro)
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Tan04g0796 726 PANTHER OS03G0856100 PROTEIN 96 457 - -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 342 374 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 551 584 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 411 445 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 306 338 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 656 690 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 376 410 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 446 479 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 172 200 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 271 303 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 586 619 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 516 549 IPR002885 -
Tan04g0796 726 NCBIfam pentatricopeptide repeat 621 654 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 653 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Tan04g0796 726 Gene3D Tetratricopeptide repeat domain 299 370 IPR011990 GO:0005515(InterPro)
Tan04g0796 726 Gene3D Tetratricopeptide repeat domain 88 225 IPR011990 GO:0005515(InterPro)
Tan04g0796 726 Gene3D Tetratricopeptide repeat domain 226 298 IPR011990 GO:0005515(InterPro)
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 654 688 IPR002885 -
Tan04g0796 726 Pfam PPR repeat 171 196 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Tan04g0796 726 SUPERFAMILY TPR-like 273 689 IPR011990 GO:0005515(InterPro)
Tan04g0796 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Tan04g0796 726 Pfam PPR repeat 510 542 IPR002885 -
Tan04g0796 726 Pfam PPR repeat 440 471 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0796 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0795 Tan-Chr4:6757275 Tan04g0796 Tan-Chr4:6757275 7.40E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012317 1 3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 2 0 27