Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0802 ATGCCATCTCCTCATCTTCCTCCTCTTCCTTCTCTCCAATTCTCCAAAACCCTAAAACCCTCCCATTCTCTTCCTCTTCTCGCTATGAAGGACCGCTCTCCTTCCTCCAATGGCGCCGTCTACGTCCCTCCTCACCTCCGTCTCCGCTCCGTCGTCACTTCTCCCAATCATTCCCCTCCTGTTTCCGCTCTTGACTGCAAGCTTCGGGAGGCGGACGCTCCGCCCTCGGTTCTCAATTCCGTAGCACCTGCTCCGCCTTGTCTGCATGCTCGATCGCAGGAACTCCTCCCGACCGGGAATTCGCGTTGTAGTTCCCTGCAGTTTGACTCCGCCTACGACGATGGACCTCCGGTGGAGACTTGGGATTGTAATTTTGAGTTTTCGCATCAATCGGGTGTTTCACCTTCCTTCAACATTGATTTTTGGAAAAGGAAGTTAGCATTACTTTTACGTGACAAGGAGAAGCAAGAGTTAGTTTCAAGGGAGAAAAAAGATAGACATGATTTTGAGCAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTGTTTAGTAAGGTCCCATTGCCAAACTACAGATTTGACTTGGATGATCGGCGCCCACAGAGGGAGGTCTCTTTACCTCCTGGGTTGCTTAGAAGAGTAGATGAACATATGGGAGAATTTTTCTCTCAGAAATCTAGGTTTAAAGGTTTTCAAGATATCTCCGTCTCTAGATCGAGTAGCAGTGGTAGCATTGCTACAGATGAAGGGCTTTTCGAGCAACCTGAGCTTCAAGCATCTAGTAAGGCTGTGATGGAAAAAATTCTTTGGCGGAGAAGTTTGCATCTGCGTGAACAACAGCATGCTTGGCAGTCATCTCTCGAAGGAAGAGAAATGCTGGAATTCCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATGCAATATTGACCACAATCTCACAGAATCAGGTTATTATTATATCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAATTCATTTTGGAATCAGAAATAGAATCACTTTGTGGAGCTGGTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCTATGTCTGTCTCTGAGAGAGTTGCTTCCGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGAGACTCATCTTCTCTTTTGCACCACGGGCATCTTGTTGAGAAGATTGTTGGTTGATAGAAATTTAAAAGGCATAACTCATGTTATTGTCGACGAAATTCATGAACGTGGAATGAATGAAGATTTTCTGCTCATTGTCCTGAAAGACCTCCTTCCTCGACGGCCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCATATTCCGGGATTCACACACCCTGTCCGAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCAAGAGAAGACATGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCCTCTGTTCAGGATGCACTTATGGCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCTTTGTCGTGTTGGAATCCTGATTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGCATATGTGAGAGTGAAATGCCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCACCCTTTATTAGGAGATACAAGTCAAGTTATGTTGTTGGCATGTCATGGTTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTATCGAACCTGACAAAGGAGTGAGAAAGATAGTGCTTGCAACAAATATTGCTGAGACAAGTATCACTATAAATGATGTTGTGTATGTTCTGGACTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCCTCGTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGTTATCATCTATACCCTAGGTGTGTGTTTGATGCTTTTGCCGAGTATCAGCTGGCAGAAATTTTGAGAACACCTTTGCAGTCCCTCTGCCTGCAAATAAAAAGCTTAAAGCTTGGAAGTATATCGGAGTTTCTATCTAGGGCTTTGCAGTCACCAGAGCTGCTAGCGGTACAGAATGCTATTGAATATTTGAAGATCATTGGGGCATTTGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTGACTATGCTCCCAATGGAGCCAAAACTGGGAAAGATGTTGATATTAGGTGCTATCTTCAATTGTTTGGATCCAATTTTGACCATTGTTGCTGGCCTGAGTGTGAGAGACCCTTTTCTAACGCCACTGGAGAAGAAGGATGCTGCAGAGGCTGCAAAGGCCCAATTTTCACAAGATCATAGTGACCACCTTGCTATTATCCGGGCTTATGGGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGATATGACTTCTGTTGGAAGAACTTCCTTTCTGTCCAATCGATGAAGGCTATTGATTCACTAAGGAAGGAGTTTTTCTCTTTGCTTAGAGATACTGGTTTGGTTGATGGGTACTCAGACTCCTACAATGCTTGGAATCTTGATGAACAACTCATACGTGCAGTTATTTGCTATGGCCTATATCCTGGAGTTTGCTCTGTTGTGCATAACGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTTCTCTATTCGAACTCTGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGCTAGTTTTCAATGAGAAGATAAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCTCTCTCTGACTCGATGCTGCTTCTCTTTGGTGGAAGCATTTCAAAAGGTGATTATGATGGACACTTGAAAATGTTGAGCGGTTTCTTGGAATTTTTTATGAAACCTGATGTAGCAGAGACATATCAGAAATTAAGAATGGAACTTGAAGAGCTTATACAGAAGAAACTACTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTTGTTTTTGGCCGCCAGATCCTTCAGCAGCCCTTCAAGGCATCTACTCCGGCAGCAGCACCAACGTCTGTTTCAAGAATTGAAAGTGGACCTGGTGGTGATAATTCTAAGAGTCAGCTCCAGACTTTACTCACGAGGGCTGGATATGCTGCACCTACCTATAAGACTAAGCAATTGAAGAATAATCAATTCCGAGCAACTGTGGAATTTAATGGCCTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCTGAAGCTCTTGAGTGGTTGATGGGTGGAACTCAGACGGGACATGACCATCTCAACCAAATGTCTATGATGCTAAAAAGGAGCAAGAAGGATCATAACTAA 3609 43.5 MPSPHLPPLPSLQFSKTLKPSHSLPLLAMKDRSPSSNGAVYVPPHLRLRSVVTSPNHSPPVSALDCKLREADAPPSVLNSVAPAPPCLHARSQELLPTGNSRCSSLQFDSAYDDGPPVETWDCNFEFSHQSGVSPSFNIDFWKRKLALLLRDKEKQELVSREKKDRHDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHMGEFFSQKSRFKGFQDISVSRSSSSGSIATDEGLFEQPELQASSKAVMEKILWRRSLHLREQQHAWQSSLEGREMLEFRKNLPAYKEKDAILTTISQNQVIIISGETGCGKTTQVPQFILESEIESLCGAGCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRETHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASSVQDALMAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVSICESEMPGAILVFMTGWDDISSLKEKLQSHPLLGDTSQVMLLACHGSMASSEQRLIFIEPDKGVRKIVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFDAFAEYQLAEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLILGAIFNCLDPILTIVAGLSVRDPFLTPLEKKDAAEAAKAQFSQDHSDHLAIIRAYGGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYSDSYNAWNLDEQLIRAVICYGLYPGVCSVVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWLVFNEKIKVNSIFLRDSTALSDSMLLLFGGSISKGDYDGHLKMLSGFLEFFMKPDVAETYQKLRMELEELIQKKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFGRQILQQPFKASTPAAAPTSVSRIESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGTQTGHDHLNQMSMMLKRSKKDHN 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6777384 6792938 - Tan0003020.1 Tan04g0802 749206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0802 1202 PANTHER ATP-DEPENDENT RNA HELICASE 263 1109 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Tan04g0802 1202 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 924 1006 IPR011709 -
Tan04g0802 1202 SUPERFAMILY dsRNA-binding domain-like 1109 1181 - -
Tan04g0802 1202 FunFam DExH-box ATP-dependent RNA helicase DExH3 568 724 - -
Tan04g0802 1202 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1113 1178 IPR014720 -
Tan04g0802 1202 CDD SF2_C_RHA 489 714 - -
Tan04g0802 1202 Gene3D - 571 725 IPR027417 -
Tan04g0802 1202 Pfam Double-stranded RNA binding motif 1115 1176 IPR014720 -
Tan04g0802 1202 FunFam Putative ATP-dependent RNA helicase DHX36 748 852 - -
Tan04g0802 1202 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 485 IPR014001 -
Tan04g0802 1202 Pfam Helicase associated domain (HA2), ratchet-like 798 856 - -
Tan04g0802 1202 SMART helicmild6 600 706 IPR001650 -
Tan04g0802 1202 Gene3D - 748 859 - -
Tan04g0802 1202 Gene3D - 263 486 IPR027417 -
Tan04g0802 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 871 IPR027417 -
Tan04g0802 1202 FunFam DExH-box ATP-dependent RNA helicase DExH3 261 486 - -
Tan04g0802 1202 SMART ultradead3 306 499 IPR014001 -
Tan04g0802 1202 Pfam DEAD/DEAH box helicase 316 469 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan04g0802 1202 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 746 IPR001650 -
Tan04g0802 1202 FunFam DExH-box ATP-dependent RNA helicase DExH3 1092 1181 - -
Tan04g0802 1202 CDD DEXHc_RHA-like 324 484 - -
Tan04g0802 1202 SMART ha2_5 768 858 IPR007502 -
Tan04g0802 1202 SMART DRBM_3 1114 1177 IPR014720 -
Tan04g0802 1202 Gene3D - 1097 1180 - -
Tan04g0802 1202 MobiDBLite consensus disorder prediction 1092 1116 - -
Tan04g0802 1202 Pfam Helicase conserved C-terminal domain 577 705 IPR001650 -
Tan04g0802 1202 Pfam Helicase associated domain (HA2), winged-helix 769 796 IPR048333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0802 K14442 - - csv:101208774 2098.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0802 Tan-Chr4:6777384 Tan08g1618 Tan-Chr8:65682823 2.90E-237 dispersed
Tan04g2225 Tan-Chr4:79694077 Tan04g0802 Tan-Chr4:6777384 1.00E-35 transposed
Tan05g2474 Tan-Chr5:75943292 Tan04g0802 Tan-Chr4:6777384 3.50E-86 transposed
Tan06g0708 Tan-Chr6:5410730 Tan04g0802 Tan-Chr4:6777384 1.30E-91 transposed
Tan08g0482 Tan-Chr8:4663268 Tan04g0802 Tan-Chr4:6777384 2.20E-91 transposed
Tan04g0802 Tan-Chr4:6777384 Tan09g1857 Tan-Chr9:69855420 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70