Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g0812 | ATGGCTTCCGGCGGCGGCGTCGAGGTTGAAGTCAAGGGAGTGTTCATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTGGTGGCTTTTGGCGCTCAAAACGCCGTCGCTATTTTCTCTCCCAACTCTGCACAAATTTTGACGACCCTTCGCGGTCACAACGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAACAAGTTTTCGTTTAGAGCCAAGCATTTGAACTGTCATTATCTGCTTTCTGGTGACTCTGAGGGTGCCATTCATTTATGGGAATTGTCGCTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTACTGCGCATGTAATTTCTGAAACGGTGGCAATTGTTGCGTCTGCTTCTTCAGATGGTTCTATTTGTGTTTGGGAGGTGGCTTTTCCGTCCACCAATGAAGGTGATTGTACATTGGTGTTGCTTGACTCGCTCTTGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCAGTCATATGGTCCTAGCAATGGGAGGTTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTAAAAGGACATACGGATTGGATTAGAAGTCTAGACTTCTCTTTGCCCATGTGCAAAAATGGAGAAGCAAATAGCATTATGCTGGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTCTTCATGGTTCTTTAGCCGACATGAATGGAGGATGCAAAAAAGAGGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCTGGACCATCAACTTACCAGGTATCATTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGCAGCCTCCTTCAGCTGCAGAAACAGAAGGGGTTCCCTGCTATCAATCTGAAAGCATCTTATCTGCATCTATGGACAAGACAATGATGATTTGGAAACCTGAAAAGACTTCTGGAATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTGTGCTTTAGGGTTTTATGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGCTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGAATCAGTTCAGATGACTGGAAACCTCAAAAGGTTCCCTCAGGACATTTTGCTGCTGTCATGGATATTTCATGGGCCAGATCTGGTGATTATATTATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTGCTCCCTGGAAAAATGTCAGTTCTCTTGAAGGAGGTTCTTGGCATGAAATAGCTCGACCTCAAGTCCACGGGCATGATATTAATTGTGTCACCATAATACAAGGAAAGGGGAACCATCGCTTTGTCAGCGGAGCTGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTCTGAAGACATTGAGTCATGCCACACTACATAATTTTGTGGCCACAGAAGATCAACTTGTGGATGTTCAGATTTTGGGTGCTAATATGTCGGCGCTTGGGCTTTCACAAAAACCTATTTATGTTCATTCTGCTGATAAGACTCCAGATAGGAGTGGAAATGAAGGTCTTGATACCCTTGAAACCATTCCCGATGCAGTTCCTGTTGTTCTGACTGAACCTCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATCACAAGGGAAAGCTTGTTGCTTCATCCTGTAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTACGTGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACACAAATGGAGTTTTCCCATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTTAAAATCCAGAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCATATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGTGAAAATATGGACTGTGACACCTGATTCTTCAGTTAAGCCCCTAACAACTTTGTCACAGTTCAAATCTAGCGTCACCGCTTTATCGTGGGTCGGCCTCGATCTCGAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAGTGGCCTCCTTGAGCTGTGGAGTTTATCTATCAAAAGAACAGATAATGTTAGCTCGAACATAGTTGCTTCTGTCGTTTTACGTCTCGATCCATTGGTGTGCCATGTTTCCTCGGTCAACCATTTGTCATGGAGAGAACCAGAGAAGAACGAAGAGTGCAGGAAGCTGCAGCTTGCTTCCTGTGGGGCGGACCACTGTGTTAGAGTGTTTGAGGTAAACGTTTCTGTATGA | 2517 | 43.74 | MASGGGVEVEVKGVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPNSAQILTTLRGHNASVNCTHWLPSNKFSFRAKHLNCHYLLSGDSEGAIHLWELSLLDQKWRNVLQLPKSHKKGITCITAHVISETVAIVASASSDGSICVWEVAFPSTNEGDCTLVLLDSLLVGSKSMVALSLAELPGNVSHMVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMCKNGEANSIMLVSSSQDRGIRIWKMALHGSLADMNGGCKKEEISLTSYIQGPIFTAGPSTYQVSLESLLIGHEDWVYSVQWQPPSAAETEGVPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNVGISSDDWKPQKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFAPWKNVSSLEGGSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLHNFVATEDQLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGTWKAVGRLQSHSLTITQMEFSHDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPYGHEFATGSRDKTVKIWTVTPDSSVKPLTTLSQFKSSVTALSWVGLDLESNGLLAVGMESGLLELWSLSIKRTDNVSSNIVASVVLRLDPLVCHVSSVNHLSWREPEKNEECRKLQLASCGADHCVRVFEVNVSV | 838 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6909534 | 6916140 | - | Tan0004607.1 | Tan04g0812 | 749216 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g0812 | 838 | Gene3D | - | 24 | 280 | IPR015943 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | PRINTS | G protein beta WD-40 repeat signature | 137 | 151 | IPR020472 | - | |
| Tan04g0812 | 838 | PRINTS | G protein beta WD-40 repeat signature | 708 | 722 | IPR020472 | - | |
| Tan04g0812 | 838 | PRINTS | G protein beta WD-40 repeat signature | 246 | 260 | IPR020472 | - | |
| Tan04g0812 | 838 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 219 | 260 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 682 | 721 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 456 | 497 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 405 | 444 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 297 | 348 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 586 | 630 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 358 | 397 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 784 | 833 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 212 | 259 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 107 | 150 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 633 | 672 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 727 | 770 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SMART | WD40_4 | 50 | 100 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | FunFam | Elongator acetyltransferase complex subunit 2 | 367 | 679 | - | - | |
| Tan04g0812 | 838 | Gene3D | - | 684 | 837 | IPR015943 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | PANTHER | ELONGATOR COMPLEX PROTEIN 2 | 13 | 836 | IPR037289 | GO:0002098(InterPro)|GO:0033588(InterPro) | |
| Tan04g0812 | 838 | SUPERFAMILY | WD40 repeat-like | 192 | 727 | IPR036322 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Pfam | WD domain, G-beta repeat | 53 | 99 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Pfam | WD domain, G-beta repeat | 304 | 347 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Pfam | WD domain, G-beta repeat | 406 | 443 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Pfam | WD domain, G-beta repeat | 635 | 671 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Pfam | WD domain, G-beta repeat | 686 | 720 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Pfam | WD domain, G-beta repeat | 116 | 149 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Pfam | WD domain, G-beta repeat | 218 | 258 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 689 | 730 | IPR001680 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Gene3D | - | 577 | 683 | IPR015943 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SUPERFAMILY | WD40 repeat-like | 686 | 834 | IPR036322 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Gene3D | - | 401 | 548 | IPR015943 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | Gene3D | - | 287 | 400 | IPR015943 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | SUPERFAMILY | WD40 repeat-like | 34 | 352 | IPR036322 | GO:0005515(InterPro) | |
| Tan04g0812 | 838 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 689 | 722 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g0812 | K11374 | - | - | csv:101209018 | 1571.99 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g358 | . | . | . | . | . | . | Bma14g01910 | . | . | Cmo18g01004 | . | Cma18g00995 | . | Car18g00918 | Sed06g1949 | Cpe09g00322 | Cpe01g01327 | Bhi07g01286 | Tan04g0812 | Cmetu10g0150 | Lac13g0532 | Hepe01g1164 | . | . | Cla05g02273 | Cam05g2443 | Cec05g2464 | Cco05g2508 | Clacu05g2438 | Cmu05g2301 | Cre05g2419 | . | . | Cone6ag0423 | Cone9ag0445 | Lsi04g00222 | Csa05g02643 | Chy10g01176 | Cme10g00228 | . | . | Bda07g01725 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0011732 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 30 |