Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0824 ATGGCTTCCAGAGAAGGGAGGCGTCATCATCATCATCATCAATATCATCATCATCAATATCATCATCATCATCACAATTTGGTGCCTCTTGCTGCTTTGATCAGTAAGGAGGTGAGGAATGAGAGATTGGAGAAACCCACTGTAAGATATGGGAATGCAGCTCAGTCTAAAAAGGGGGAAGATTATTTTCTCATGAAAACTGATTGTCAGCGAGTTCCTGGGAGCCCTTCATCCACTTTCTCTGTATTTGCTATATTTGACGGACACAATGGAAATGCTGCAGCAATTTTCACGAGGGAACATTTGTTGAGTCATGTTTTGGGGGCGCTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAAAGCAGAGGTGAGACTTCTGGAACTACAGCTACGTTTGTGATCATCGATGGATGGACAGTGACAGTTGCATCAGTTGGAGATTCTCGATGTATTTTAGATACTCAGGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATAGACTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATTGTTGGTGGTGCTGAGATCGGCCCGCTCCGTTGTTGGCCAGGAGGCTTATGCCTTTCTCGATCAATTGGAGACATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTTGTGAAACAAGTAAAGTTATCAAATGCTGGTGGGAGACTTATAATTGCTTCTGATGGCATCTGGGACGCCCTTTCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCCGCCGAGCTTGCTGCTAGACAAGTTGTGAAGGAAGCCTTAAGAACAAGGGGCTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAGCACAGTCTTCTCCTCCTCCAAAGAAACAAAGCGTTCTGAAGTCTCTATTGTTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTATCAGCTATCGGTCTCGTGGAAGAATTGTTTGAAGACGGCTCCGCTATGCTGGCTGAAAGGTTGGTCTTTCCTCTCTGGGTTTTGTTTATCTATTCACGGTTCTTTCTTATTAAAACTAACCATTCAAATGTGGACTAA 1185 44.56 MASREGRRHHHHHQYHHHQYHHHHHNLVPLAALISKEVRNERLEKPTVRYGNAAQSKKGEDYFLMKTDCQRVPGSPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPPPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGLVEELFEDGSAMLAERLVFPLWVLFIYSRFFLIKTNHSNVD 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7005469 7009577 + Tan0014832.2 Tan04g0824 749228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0824 394 CDD PP2Cc 57 311 IPR001932 -
Tan04g0824 394 SMART PP2C_4 45 309 IPR001932 -
Tan04g0824 394 Gene3D - 49 318 IPR036457 -
Tan04g0824 394 MobiDBLite consensus disorder prediction 1 22 - -
Tan04g0824 394 Pfam Protein phosphatase 2C 75 296 IPR001932 -
Tan04g0824 394 SUPERFAMILY PP2C-like 55 311 IPR036457 -
Tan04g0824 394 PANTHER PROTEIN PHOSPHATASE 44 310 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan04g0824 394 ProSiteProfiles PPM-type phosphatase domain profile. 42 311 IPR001932 -
Tan04g0824 394 FunFam probable protein phosphatase 2C 5 49 316 - -
Tan04g0824 394 SMART PP2C_SIG_2 44 311 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0824 Tan-Chr4:7005469 Tan09g0121 Tan-Chr9:5771649 2.80E-144 dispersed
Tan04g0823 Tan-Chr4:7005469 Tan04g0824 Tan-Chr4:7005469 9.80E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0824 - - - 0.0