Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0825 ATGGCGGCGTATACTCTAATGTCGCATTTAGCTCTCTGTCTCTGTTTACTCCCTTTTACACATCTATATGCCACTTCGAACCCAGATTTAGACGCTTTAATGGCGTTCAAAGCGACGTCTGATAAAGGAAATATGCTCACCACATGGAACTCTACCTCCAACCCATGTGCTTGGGATGGAGTCTCTTGCCTCAGAAACAGGGTCTCGAGGTTGGTTCTTGAGAATCTTAATCTTACAGGCTCTATCGGACCTCTCACTGCTTTGACTCAGTTACGAGTGCTGAGCCTCAAGCGGAACCGTCTCTCCGGCCCCATTCCCGATCTCTCCAACTTCACAGCTCTCAAACTCGTGTTTCTCTCGTACAACGAATTTTCCGGCAACTTCCCGGCTTCTTTCCTGTCTCTCGTCCGGCTCTACCGTCTCGATCTCTCTCACAATAACTTGACCGGAGAGATTCCGGCCTCTGTTAACCGTTTGACTCATCTTCTCACTCTCCGGCTCGAAGATAACCGGTTTTCTGGTTCCATTTTGAAGCTGAACCTCCCGAATCTTCAGGACTTCAACATTTCAGCGAACCGTCTCTCCGGCGAAATTCCCAAATCGTTGTCGACGTTTCCGGAGTCTTCTTTCGGCCAGAACTTGGGTTTGTGTGGATCTCCTCTACAGAGCTGCAAGAGCATTGTCAGTAACCCGACGGAACCGGGATCCGAAGGCGCGATTGCCTCACCCATTACACCGCCGAGGAACTTCACGGTTTCATCTTCTCCGACTTCGCTTCCCGGAGTTACAGCCGATACAAAGCCGGAAAATACCCACCACCACGGCACTGGGAAGATAGGTTCTCTAGCGCTAATCGCCATAATTCTCGGCGACGTTCTGGTGTTAGCGGTGGTCTCGCTTCTTCTCTACTGTTATTTCTGGAGAAACTCGTCTGACAAAGCCCGAGACGGGAAGGGCTCGAAGCTTCTGGAGAGCGAGAAGATCGTTTATTCTTCCAGTCCATATCCAGCCCAGGCCGGAACAGAGAGGGGCCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCGTACAAAGCGATTCTCGACGACGGCAATGTCGTAGGGGTGAAACGGCTGAAAGACGCGCAGGTTGGAGGGAAACGAGAGTTCGAGCAGCACATGGAAGTGTTGGGAAGGTTGAGACATGCGAATATTGTAAGCTTGAGAGCTTACTATTTTGCCAGAGAGGAGAAGTTATTGGTTTATGATTACATGCCCAACGGCAGCTTGTTCTGGCTTCTTCACGGGAACAGAGGCCCCGGACGGACGCCGTTGGACTGGACGACGAGGTTGAAGATCGCCGCTGGAGCGGCGAGAGGTCTGGCCTTCATTCACAACTCCTGCAAGTCCCTCAGGCTCGCTCATGGCAATGTTAAATCCACGAACGTCCTTTTGGACCAATCGGGAAATGCTCGAGTCTCCGATTTCGGATTGTCCCTTTTCACTCCCCCTTCCACTCCTCGATCCAACGGCTACCGGGCGCCGGAGTGCGGCGAGGGCCGGAAACTGACCCAGAAATCCGACGTGTATTCATTTGGGGTTCTTCTCCTCGAGCTGCTCACTGGAAAATGTCCCTCCGTCGTGGAGAATGGCGGGCCGGGAGGCGGCGGATACGGCAGCGTATTGGATTTGCCCCGATGGGTTCAGTCGGTAGTGCGAGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATTGAAGAGGAAATGGTGGGGCTTCTGCAGATCGCCATGGCTTGTACTTCGGCTTCGCCGGATCAACGGCCGAAGATGAACCATGTGGTGAAGATGATCGACGAGCTCCGTGGGGTGGAGGTGTCGCCGTTCCACGACGGCTCCGACTCGGTGACGGAGTCGCCGTCGGTGTCGGAGGGCACTTGCGGCGGAGGAGCCAGTCAATAG 2016 53.52 MAAYTLMSHLALCLCLLPFTHLYATSNPDLDALMAFKATSDKGNMLTTWNSTSNPCAWDGVSCLRNRVSRLVLENLNLTGSIGPLTALTQLRVLSLKRNRLSGPIPDLSNFTALKLVFLSYNEFSGNFPASFLSLVRLYRLDLSHNNLTGEIPASVNRLTHLLTLRLEDNRFSGSILKLNLPNLQDFNISANRLSGEIPKSLSTFPESSFGQNLGLCGSPLQSCKSIVSNPTEPGSEGAIASPITPPRNFTVSSSPTSLPGVTADTKPENTHHHGTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWRNSSDKARDGKGSKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVGVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKSLRLAHGNVKSTNVLLDQSGNARVSDFGLSLFTPPSTPRSNGYRAPECGEGRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGSVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTSASPDQRPKMNHVVKMIDELRGVEVSPFHDGSDSVTESPSVSEGTCGGGASQ 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7019190 7021975 + Tan0008843.1 Tan04g0825 749229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0825 671 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 646 - -
Tan04g0825 671 Gene3D Ribonuclease Inhibitor 179 225 IPR032675 -
Tan04g0825 671 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Tan04g0825 671 Gene3D Transferase(Phosphotransferase) domain 1 438 650 - -
Tan04g0825 671 MobiDBLite consensus disorder prediction 232 274 - -
Tan04g0825 671 FunFam pollen receptor-like kinase 1 333 437 - -
Tan04g0825 671 Gene3D Phosphorylase Kinase; domain 1 337 437 - -
Tan04g0825 671 Pfam Leucine Rich Repeat 138 158 IPR001611 GO:0005515(InterPro)
Tan04g0825 671 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Tan04g0825 671 SUPERFAMILY L domain-like 42 205 - -
Tan04g0825 671 ProSiteProfiles Protein kinase domain profile. 362 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0825 671 CDD STKc_IRAK 368 639 - -
Tan04g0825 671 MobiDBLite consensus disorder prediction 650 671 - -
Tan04g0825 671 PANTHER OS05G0588300 PROTEIN 14 645 IPR050994 -
Tan04g0825 671 SUPERFAMILY Protein kinase-like (PK-like) 366 636 IPR011009 -
Tan04g0825 671 MobiDBLite consensus disorder prediction 646 671 - -
Tan04g0825 671 MobiDBLite consensus disorder prediction 246 265 - -
Tan04g0825 671 Pfam Protein tyrosine and serine/threonine kinase 366 635 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0825 671 Gene3D Ribonuclease Inhibitor 27 178 IPR032675 -
Tan04g0825 671 FunFam Nuclear pore complex protein NUP107 26 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0825 Tan-Chr4:7019190 Tan08g0198 Tan-Chr8:1771376 2.60E-102 dispersed
Tan08g1788 Tan-Chr8:69872201 Tan04g0825 Tan-Chr4:7019190 7.40E-113 transposed
Tan11g1832 Tan-Chr11:21409204 Tan04g0825 Tan-Chr4:7019190 6.90E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67433 PF07714 PK_Tyr_Ser-Thr 1.60E-32 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0825 - - - 0.0