Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0827 ATGTTCAAGGAAGAGGAACAGGTGTTTCCGTTACTTACTGAGAAGTTTTCTTTTGAAGAGCAGGCATCATTAGTTTGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGAGCAAATGCTTGAGCAAAATTATCCCCCAGCAAAAGCTTCTTCAGAAGGTCATATTTTCCTGGATGGAGAATGCAAGAACGACGTGTGCAAATCAAAGTTTGTATGATGACAATCTAGAGTTTCAATGTCTACACTCTCCGGTCCGTGATCTTATATGTAGGCCACAGAAGGGGAATAGCACTTCTGAATCAACTAGAAGTGGTAAAAGGAAATACGTGGAGCAATGTAATTTTACCTATTCTACTGCTTCAGTTGCTTGTCCCATCAACGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGGGACGTACCATTGTCTCCTGATTTTTCTGAGTTGTCTGCACTCAAGGAGAGGCTGCAGTTTATTGGGGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCATTTGCTGATCAGCACGCAGAAGAAGAAATCCAATTTGATAACCTTAGGCTCTTGATAGAAAGTATTCAAGCTGATAGACTTAAATATACTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAAAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTGGGACCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAACGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAGGCAAGATCGTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCGCTCGTTACACTATTTTCTGGTTGGGCATGCAAAGGCCATCCCATGAGCATTTGTATTTCTGCAAGTGCTATTAGCTATTGTCCTGAACGGATATTTACTGGAGATGAAGAATCATGCTCCTTTTCTTCTGCCAATGAAAAACCTTCATGCAATCAGGCAACTGAGTGTGCGAGGCTATCCAATTGTGGGAAGGCAGCATGCCATGGAGATTTAAATGGCCGTCTTCCTTTGAAAAACCCAAGCAAAAAACTTCATTTCACTCATGTAAAACAACTTGCTTGTGTTCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGACCCCTGGCAGCAGCAAAATCACTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTGTTTAGTCTGGAAAATGAACCAACCTCTTGTGGCAGTGGTTCTAAGTCACGGCCTATCGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTTGGTGATTGCGATGACAATTTCTTTAGGAAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTATATAAAGCTCATAGTAACGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTAAGCCACTCTTATACATTAGACCACAAACAAGAGGAAGAGCTTTTTGAAGGTATTTCTACTGCACTTTCTAAGCTGACAAATATTCGCAGAGACTTGAATGGTAAGAAAAAGTATGACTATTCAAATTGGACGAAGTCTCATACCTCTGATATTAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAGGAATCGGAGTTGTTGCCATTGTTTCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTCCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCGGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGACCTGCTACATCTCCACATTACATGGAAACTATCAGTCATATATCTGGAGGTTCTGATTCCCATGGCTTCTGTGACCAAAAAAATGATTCAGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAACGAAAATGAACTTGAATCGGAAATAAGAAAGGTTGCTCGGGATTCAACCATTGACCCTAGGAGAAAGGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCAACTACAGGTGAGAACTCAGATGCAAAAGAACTGATCGCAAGTGCCCCATCATTTCGTGATCCTAAGAAACAGACTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAGCTGCTTGCAACATGTTGCGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTCTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGCCCTTTCTGCAATATATGTCGTCTTGGGAAGGGGCTTGGTACTGATTTTTTTCATTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAGAGGGGCCTAGAAACAAATTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTTCCTTGTGGACATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAATCCTTAGGAGATATGACGGTATGGAAATTTCTATCTCAAACAAAAGCATGA 3051 40.18 MFKEEEQVFPLLTEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMSKCLSKIIPQQKLLQKVIFSWMENARTTCANQSLYDDNLEFQCLHSPVRDLICRPQKGNSTSESTRSGKRKYVEQCNFTYSTASVACPINEILHWHNAIKKELNSIAEAARDVPLSPDFSELSALKERLQFIGEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDNLRLLIESIQADRLKYTSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLARKHLGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPMSICISASAISYCPERIFTGDEESCSFSSANEKPSCNQATECARLSNCGKAACHGDLNGRLPLKNPSKKLHFTHVKQLACVPGLGVDDNNLGMRPLAAAKSLRSLCFGPYAPSLNSSLFSLENEPTSCGSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCDDNFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISTALSKLTNIRRDLNGKKKYDYSNWTKSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTREEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMETISHISGGSDSHGFCDQKNDSVFKPGWKEIFRMNENELESEIRKVARDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENSDAKELIASAPSFRDPKKQTFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGLSMAKYYCSICKLFDDEREVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVWKFLSQTKA 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7030918 7038964 + Tan0008373.3 Tan04g0827 749231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0827 1016 SUPERFAMILY RING/U-box 956 1004 - -
Tan04g0827 1016 Gene3D nmb1532 protein domain like 479 704 - -
Tan04g0827 1016 Gene3D nmb1532 protein domain like 145 291 - -
Tan04g0827 1016 FunFam Zinc finger protein-related isoform 1 952 1001 - -
Tan04g0827 1016 CDD RING-H2_Pirh2-like 956 999 - -
Tan04g0827 1016 ProSiteProfiles Zinc finger CTCHY-type profile. 893 956 IPR017921 -
Tan04g0827 1016 SUPERFAMILY Zinc hairpin stack 894 949 IPR037275 -
Tan04g0827 1016 ProSiteProfiles Zinc finger CHY-type profile. 821 890 IPR008913 GO:0008270(InterPro)
Tan04g0827 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 952 1001 IPR013083 -
Tan04g0827 1016 ProSiteProfiles Zinc finger RING-type profile. 957 999 IPR001841 -
Tan04g0827 1016 Pfam Hemerythrin HHE cation binding domain 484 645 IPR012312 -
Tan04g0827 1016 Pfam Hemerythrin HHE cation binding domain 144 276 IPR012312 -
Tan04g0827 1016 Pfam CHY zinc finger 828 896 IPR008913 GO:0008270(InterPro)
Tan04g0827 1016 SMART ring_2 957 998 IPR001841 -
Tan04g0827 1016 FunFam Zinc finger protein BRUTUS 479 709 - -
Tan04g0827 1016 Pfam Ring finger domain 956 998 IPR001841 -
Tan04g0827 1016 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 519 1011 - -
Tan04g0827 1016 SUPERFAMILY CHY zinc finger-like 821 884 IPR037274 GO:0008270(InterPro)
Tan04g0827 1016 CDD Hr-like 147 274 - -
Tan04g0827 1016 CDD Hr-like 488 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0827 Tan-Chr4:7030918 Tan04g0831 Tan-Chr4:7030918 0.00E+00 dispersed
Tan04g0826 Tan-Chr4:7030918 Tan04g0827 Tan-Chr4:7030918 0.00E+00 tandem
Tan04g0827 Tan-Chr4:7030918 Tan04g0828 Tan-Chr4:7030918 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0827 K16276 - csv:101217252 1791.55