Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0827 | ATGTTCAAGGAAGAGGAACAGGTGTTTCCGTTACTTACTGAGAAGTTTTCTTTTGAAGAGCAGGCATCATTAGTTTGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGAGCAAATGCTTGAGCAAAATTATCCCCCAGCAAAAGCTTCTTCAGAAGGTCATATTTTCCTGGATGGAGAATGCAAGAACGACGTGTGCAAATCAAAGTTTGTATGATGACAATCTAGAGTTTCAATGTCTACACTCTCCGGTCCGTGATCTTATATGTAGGCCACAGAAGGGGAATAGCACTTCTGAATCAACTAGAAGTGGTAAAAGGAAATACGTGGAGCAATGTAATTTTACCTATTCTACTGCTTCAGTTGCTTGTCCCATCAACGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGGGACGTACCATTGTCTCCTGATTTTTCTGAGTTGTCTGCACTCAAGGAGAGGCTGCAGTTTATTGGGGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCATTTGCTGATCAGCACGCAGAAGAAGAAATCCAATTTGATAACCTTAGGCTCTTGATAGAAAGTATTCAAGCTGATAGACTTAAATATACTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAAAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTGGGACCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAACGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAGGCAAGATCGTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCGCTCGTTACACTATTTTCTGGTTGGGCATGCAAAGGCCATCCCATGAGCATTTGTATTTCTGCAAGTGCTATTAGCTATTGTCCTGAACGGATATTTACTGGAGATGAAGAATCATGCTCCTTTTCTTCTGCCAATGAAAAACCTTCATGCAATCAGGCAACTGAGTGTGCGAGGCTATCCAATTGTGGGAAGGCAGCATGCCATGGAGATTTAAATGGCCGTCTTCCTTTGAAAAACCCAAGCAAAAAACTTCATTTCACTCATGTAAAACAACTTGCTTGTGTTCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGACCCCTGGCAGCAGCAAAATCACTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTGTTTAGTCTGGAAAATGAACCAACCTCTTGTGGCAGTGGTTCTAAGTCACGGCCTATCGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTTGGTGATTGCGATGACAATTTCTTTAGGAAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTATATAAAGCTCATAGTAACGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTAAGCCACTCTTATACATTAGACCACAAACAAGAGGAAGAGCTTTTTGAAGGTATTTCTACTGCACTTTCTAAGCTGACAAATATTCGCAGAGACTTGAATGGTAAGAAAAAGTATGACTATTCAAATTGGACGAAGTCTCATACCTCTGATATTAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAGGAATCGGAGTTGTTGCCATTGTTTCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTCCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCGGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGACCTGCTACATCTCCACATTACATGGAAACTATCAGTCATATATCTGGAGGTTCTGATTCCCATGGCTTCTGTGACCAAAAAAATGATTCAGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAACGAAAATGAACTTGAATCGGAAATAAGAAAGGTTGCTCGGGATTCAACCATTGACCCTAGGAGAAAGGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCAACTACAGGTGAGAACTCAGATGCAAAAGAACTGATCGCAAGTGCCCCATCATTTCGTGATCCTAAGAAACAGACTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAGCTGCTTGCAACATGTTGCGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTCTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGCCCTTTCTGCAATATATGTCGTCTTGGGAAGGGGCTTGGTACTGATTTTTTTCATTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAGAGGGGCCTAGAAACAAATTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTTCCTTGTGGACATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAATCCTTAGGAGATATGACGGTATGGAAATTTCTATCTCAAACAAAAGCATGA | 3051 | 40.18 | MFKEEEQVFPLLTEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMSKCLSKIIPQQKLLQKVIFSWMENARTTCANQSLYDDNLEFQCLHSPVRDLICRPQKGNSTSESTRSGKRKYVEQCNFTYSTASVACPINEILHWHNAIKKELNSIAEAARDVPLSPDFSELSALKERLQFIGEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDNLRLLIESIQADRLKYTSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLARKHLGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPMSICISASAISYCPERIFTGDEESCSFSSANEKPSCNQATECARLSNCGKAACHGDLNGRLPLKNPSKKLHFTHVKQLACVPGLGVDDNNLGMRPLAAAKSLRSLCFGPYAPSLNSSLFSLENEPTSCGSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCDDNFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISTALSKLTNIRRDLNGKKKYDYSNWTKSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTREEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMETISHISGGSDSHGFCDQKNDSVFKPGWKEIFRMNENELESEIRKVARDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENSDAKELIASAPSFRDPKKQTFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGLSMAKYYCSICKLFDDEREVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVWKFLSQTKA | 1016 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7030918 | 7038964 | + | Tan0008373.3 | Tan04g0827 | 749231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0827 | 1016 | SUPERFAMILY | RING/U-box | 956 | 1004 | - | - | |
Tan04g0827 | 1016 | Gene3D | nmb1532 protein domain like | 479 | 704 | - | - | |
Tan04g0827 | 1016 | Gene3D | nmb1532 protein domain like | 145 | 291 | - | - | |
Tan04g0827 | 1016 | FunFam | Zinc finger protein-related isoform 1 | 952 | 1001 | - | - | |
Tan04g0827 | 1016 | CDD | RING-H2_Pirh2-like | 956 | 999 | - | - | |
Tan04g0827 | 1016 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 893 | 956 | IPR017921 | - | |
Tan04g0827 | 1016 | SUPERFAMILY | Zinc hairpin stack | 894 | 949 | IPR037275 | - | |
Tan04g0827 | 1016 | ProSiteProfiles | Zinc finger CHY-type profile. | 821 | 890 | IPR008913 | GO:0008270(InterPro) | |
Tan04g0827 | 1016 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 952 | 1001 | IPR013083 | - | |
Tan04g0827 | 1016 | ProSiteProfiles | Zinc finger RING-type profile. | 957 | 999 | IPR001841 | - | |
Tan04g0827 | 1016 | Pfam | Hemerythrin HHE cation binding domain | 484 | 645 | IPR012312 | - | |
Tan04g0827 | 1016 | Pfam | Hemerythrin HHE cation binding domain | 144 | 276 | IPR012312 | - | |
Tan04g0827 | 1016 | Pfam | CHY zinc finger | 828 | 896 | IPR008913 | GO:0008270(InterPro) | |
Tan04g0827 | 1016 | SMART | ring_2 | 957 | 998 | IPR001841 | - | |
Tan04g0827 | 1016 | FunFam | Zinc finger protein BRUTUS | 479 | 709 | - | - | |
Tan04g0827 | 1016 | Pfam | Ring finger domain | 956 | 998 | IPR001841 | - | |
Tan04g0827 | 1016 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 519 | 1011 | - | - | |
Tan04g0827 | 1016 | SUPERFAMILY | CHY zinc finger-like | 821 | 884 | IPR037274 | GO:0008270(InterPro) | |
Tan04g0827 | 1016 | CDD | Hr-like | 147 | 274 | - | - | |
Tan04g0827 | 1016 | CDD | Hr-like | 488 | 644 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0827 | Tan-Chr4:7030918 | Tan04g0831 | Tan-Chr4:7030918 | 0.00E+00 | dispersed | |
Tan04g0826 | Tan-Chr4:7030918 | Tan04g0827 | Tan-Chr4:7030918 | 0.00E+00 | tandem | |
Tan04g0827 | Tan-Chr4:7030918 | Tan04g0828 | Tan-Chr4:7030918 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0827 | K16276 | - | csv:101217252 | 1791.55 |