Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0828 ATGCAGGTGTTTCCGTTACTTACTGAGAAGTTTTCTTTTGAAGAGCAGGCATCATTAGTTTGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGAGCAAATGCTTGAGCAAAATTATCCCCCAGCAAAAGCTTCTTCAGAAGGTCATATTTTCCTGGATGGAGAATGCAAGAACGACGTGTGCAAATCAAAGTTTGTATGATGACAATCTAGAGTTTCAATGTCTACACTCTCCGGTCCGTGATCTTATATGTAGGCCACAGAAGGGGAATAGCACTTCTGAATCAACTAGAAGTGGTAAAAGGAAATACGTGGAGCAATGTAATTTTACCTATTCTACTGCTTCAGTTGCTTGTCCCATCAACGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGGGACGTACCATTGTCTCCTGATTTTTCTGAGTTGTCTGCACTCAAGGAGAGGCTGCAGTTTATTGGGGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCATTTGCTGATCAGCACGCAGAAGAAGAAATCCAATTTGATAACCTTAGGCTCTTGATAGAAAGTATTCAAGCTGATAGACTTAAATATACTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAAAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTGGGACCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAACGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAGGCAAGATCGTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCGCTCGTTACACTATTTTCTGGTTGGGCATGCAAAGGCCATCCCATGAGCATTTGTATTTCTGCAAGTGCTATTAGCTATTGTCCTGAACGGATATTTACTGGAGATGAAGAATCATGCTCCTTTTCTTCTGCCAATGAAAAACCTTCATGCAATCAGGCAACTGAGTGTGCGAGGCTATCCAATTGTGGGAAGGCAGCATGCCATGGAGATTTAAATGGCCGTCTTCCTTTGAAAAACCCAAGCAAAAAACTTCATTTCACTCATGTAAAACAACTTGCTTGTGTTCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGACCCCTGGCAGCAGCAAAATCACTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTGTTTAGTCTGGAAAATGAACCAACCTCTTGTGGCAGTGGTTCTAAGTCACGGCCTATCGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTTGGTGATTGCGATGACAATTTCTTTAGGAAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTATATAAAGCTCATAGTAACGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTAAGCCACTCTTATACATTAGACCACAAACAAGAGGAAGAGCTTTTTGAAGGTATTTCTACTGCACTTTCTAAGCTGACAAATATTCGCAGAGACTTGAATGGTAAGAAAAAGTATGACTATTCAAATTGGACGAAGTCTCATACCTCTGATATTAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAGGAATCGGAGTTGTTGCCATTGTTTCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTCCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCGGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGACCTGCTACATCTCCACATTACATGGAAACTATCAGTCATATATCTGGAGGTTCTGATTCCCATGGCTTCTGTGACCAAAAAAATGATTCAGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAACGAAAATGAACTTGAATCGGAAATAAGAAAGGTTGCTCGGGATTCAACCATTGACCCTAGGAGAAAGGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCAACTACAGGTGAGAACTCAGATGCAAAAGAACTGATCGCAAGTGCCCCATCATTTCGTGATCCTAAGAAACAGACTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAGCTGCTTGCAACATGTTGCGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTCTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGCCCTTTCTGCAATATATGTCGTCTTGGGAAGGGGCTTGGTACTGATTTTTTTCATTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAGAGGGGCCTAGAAACAAATTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTTCCTTGTGGACATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAATCCTTAGGAGATATGACGGTATGGAAATTTCTATCTCAAACAAAAGCATGA 3036 40.18 MQVFPLLTEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMSKCLSKIIPQQKLLQKVIFSWMENARTTCANQSLYDDNLEFQCLHSPVRDLICRPQKGNSTSESTRSGKRKYVEQCNFTYSTASVACPINEILHWHNAIKKELNSIAEAARDVPLSPDFSELSALKERLQFIGEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDNLRLLIESIQADRLKYTSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLARKHLGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPMSICISASAISYCPERIFTGDEESCSFSSANEKPSCNQATECARLSNCGKAACHGDLNGRLPLKNPSKKLHFTHVKQLACVPGLGVDDNNLGMRPLAAAKSLRSLCFGPYAPSLNSSLFSLENEPTSCGSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCDDNFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISTALSKLTNIRRDLNGKKKYDYSNWTKSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTREEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMETISHISGGSDSHGFCDQKNDSVFKPGWKEIFRMNENELESEIRKVARDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENSDAKELIASAPSFRDPKKQTFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGLSMAKYYCSICKLFDDEREVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVWKFLSQTKA 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7030918 7038964 + Tan0008373.4 Tan04g0828 749232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0828 1011 Gene3D nmb1532 protein domain like 140 286 - -
Tan04g0828 1011 ProSiteProfiles Zinc finger CHY-type profile. 816 885 IPR008913 GO:0008270(InterPro)
Tan04g0828 1011 CDD RING-H2_Pirh2-like 951 994 - -
Tan04g0828 1011 FunFam Zinc finger protein BRUTUS 474 704 - -
Tan04g0828 1011 ProSiteProfiles Zinc finger RING-type profile. 952 994 IPR001841 -
Tan04g0828 1011 SMART ring_2 952 993 IPR001841 -
Tan04g0828 1011 Pfam Hemerythrin HHE cation binding domain 479 640 IPR012312 -
Tan04g0828 1011 Pfam Hemerythrin HHE cation binding domain 139 271 IPR012312 -
Tan04g0828 1011 SUPERFAMILY Zinc hairpin stack 889 944 IPR037275 -
Tan04g0828 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 947 996 IPR013083 -
Tan04g0828 1011 Gene3D nmb1532 protein domain like 474 699 - -
Tan04g0828 1011 Pfam CHY zinc finger 823 891 IPR008913 GO:0008270(InterPro)
Tan04g0828 1011 SUPERFAMILY RING/U-box 951 999 - -
Tan04g0828 1011 CDD Hr-like 142 269 - -
Tan04g0828 1011 ProSiteProfiles Zinc finger CTCHY-type profile. 888 951 IPR017921 -
Tan04g0828 1011 CDD Hr-like 483 639 - -
Tan04g0828 1011 SUPERFAMILY CHY zinc finger-like 816 879 IPR037274 GO:0008270(InterPro)
Tan04g0828 1011 Pfam Ring finger domain 951 993 IPR001841 -
Tan04g0828 1011 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 514 1006 - -
Tan04g0828 1011 FunFam Zinc finger protein-related isoform 1 947 996 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0828 Tan-Chr4:7030918 Tan04g0832 Tan-Chr4:7030918 0.00E+00 dispersed
Tan04g0827 Tan-Chr4:7030918 Tan04g0828 Tan-Chr4:7030918 0.00E+00 tandem
Tan04g0828 Tan-Chr4:7030918 Tan04g0829 Tan-Chr4:7030918 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0828 K16276 - csv:101217252 1779.61