Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0828 | ATGCAGGTGTTTCCGTTACTTACTGAGAAGTTTTCTTTTGAAGAGCAGGCATCATTAGTTTGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGAGCAAATGCTTGAGCAAAATTATCCCCCAGCAAAAGCTTCTTCAGAAGGTCATATTTTCCTGGATGGAGAATGCAAGAACGACGTGTGCAAATCAAAGTTTGTATGATGACAATCTAGAGTTTCAATGTCTACACTCTCCGGTCCGTGATCTTATATGTAGGCCACAGAAGGGGAATAGCACTTCTGAATCAACTAGAAGTGGTAAAAGGAAATACGTGGAGCAATGTAATTTTACCTATTCTACTGCTTCAGTTGCTTGTCCCATCAACGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGGGACGTACCATTGTCTCCTGATTTTTCTGAGTTGTCTGCACTCAAGGAGAGGCTGCAGTTTATTGGGGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCATTTGCTGATCAGCACGCAGAAGAAGAAATCCAATTTGATAACCTTAGGCTCTTGATAGAAAGTATTCAAGCTGATAGACTTAAATATACTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAAAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTGGGACCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAACGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAGGCAAGATCGTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCGCTCGTTACACTATTTTCTGGTTGGGCATGCAAAGGCCATCCCATGAGCATTTGTATTTCTGCAAGTGCTATTAGCTATTGTCCTGAACGGATATTTACTGGAGATGAAGAATCATGCTCCTTTTCTTCTGCCAATGAAAAACCTTCATGCAATCAGGCAACTGAGTGTGCGAGGCTATCCAATTGTGGGAAGGCAGCATGCCATGGAGATTTAAATGGCCGTCTTCCTTTGAAAAACCCAAGCAAAAAACTTCATTTCACTCATGTAAAACAACTTGCTTGTGTTCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGACCCCTGGCAGCAGCAAAATCACTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTGTTTAGTCTGGAAAATGAACCAACCTCTTGTGGCAGTGGTTCTAAGTCACGGCCTATCGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTTGGTGATTGCGATGACAATTTCTTTAGGAAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTATATAAAGCTCATAGTAACGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTAAGCCACTCTTATACATTAGACCACAAACAAGAGGAAGAGCTTTTTGAAGGTATTTCTACTGCACTTTCTAAGCTGACAAATATTCGCAGAGACTTGAATGGTAAGAAAAAGTATGACTATTCAAATTGGACGAAGTCTCATACCTCTGATATTAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAGGAATCGGAGTTGTTGCCATTGTTTCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTCCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCGGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGACCTGCTACATCTCCACATTACATGGAAACTATCAGTCATATATCTGGAGGTTCTGATTCCCATGGCTTCTGTGACCAAAAAAATGATTCAGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAACGAAAATGAACTTGAATCGGAAATAAGAAAGGTTGCTCGGGATTCAACCATTGACCCTAGGAGAAAGGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCAACTACAGGTGAGAACTCAGATGCAAAAGAACTGATCGCAAGTGCCCCATCATTTCGTGATCCTAAGAAACAGACTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAGCTGCTTGCAACATGTTGCGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTCTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGCCCTTTCTGCAATATATGTCGTCTTGGGAAGGGGCTTGGTACTGATTTTTTTCATTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAGAGGGGCCTAGAAACAAATTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTTCCTTGTGGACATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAATCCTTAGGAGATATGACGGTATGGAAATTTCTATCTCAAACAAAAGCATGA | 3036 | 40.18 | MQVFPLLTEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMSKCLSKIIPQQKLLQKVIFSWMENARTTCANQSLYDDNLEFQCLHSPVRDLICRPQKGNSTSESTRSGKRKYVEQCNFTYSTASVACPINEILHWHNAIKKELNSIAEAARDVPLSPDFSELSALKERLQFIGEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDNLRLLIESIQADRLKYTSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLARKHLGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPMSICISASAISYCPERIFTGDEESCSFSSANEKPSCNQATECARLSNCGKAACHGDLNGRLPLKNPSKKLHFTHVKQLACVPGLGVDDNNLGMRPLAAAKSLRSLCFGPYAPSLNSSLFSLENEPTSCGSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCDDNFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISTALSKLTNIRRDLNGKKKYDYSNWTKSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTREEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMETISHISGGSDSHGFCDQKNDSVFKPGWKEIFRMNENELESEIRKVARDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENSDAKELIASAPSFRDPKKQTFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGLSMAKYYCSICKLFDDEREVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVWKFLSQTKA | 1011 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7030918 | 7038964 | + | Tan0008373.4 | Tan04g0828 | 749232 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0828 | 1011 | Gene3D | nmb1532 protein domain like | 140 | 286 | - | - | |
Tan04g0828 | 1011 | ProSiteProfiles | Zinc finger CHY-type profile. | 816 | 885 | IPR008913 | GO:0008270(InterPro) | |
Tan04g0828 | 1011 | CDD | RING-H2_Pirh2-like | 951 | 994 | - | - | |
Tan04g0828 | 1011 | FunFam | Zinc finger protein BRUTUS | 474 | 704 | - | - | |
Tan04g0828 | 1011 | ProSiteProfiles | Zinc finger RING-type profile. | 952 | 994 | IPR001841 | - | |
Tan04g0828 | 1011 | SMART | ring_2 | 952 | 993 | IPR001841 | - | |
Tan04g0828 | 1011 | Pfam | Hemerythrin HHE cation binding domain | 479 | 640 | IPR012312 | - | |
Tan04g0828 | 1011 | Pfam | Hemerythrin HHE cation binding domain | 139 | 271 | IPR012312 | - | |
Tan04g0828 | 1011 | SUPERFAMILY | Zinc hairpin stack | 889 | 944 | IPR037275 | - | |
Tan04g0828 | 1011 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 947 | 996 | IPR013083 | - | |
Tan04g0828 | 1011 | Gene3D | nmb1532 protein domain like | 474 | 699 | - | - | |
Tan04g0828 | 1011 | Pfam | CHY zinc finger | 823 | 891 | IPR008913 | GO:0008270(InterPro) | |
Tan04g0828 | 1011 | SUPERFAMILY | RING/U-box | 951 | 999 | - | - | |
Tan04g0828 | 1011 | CDD | Hr-like | 142 | 269 | - | - | |
Tan04g0828 | 1011 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 888 | 951 | IPR017921 | - | |
Tan04g0828 | 1011 | CDD | Hr-like | 483 | 639 | - | - | |
Tan04g0828 | 1011 | SUPERFAMILY | CHY zinc finger-like | 816 | 879 | IPR037274 | GO:0008270(InterPro) | |
Tan04g0828 | 1011 | Pfam | Ring finger domain | 951 | 993 | IPR001841 | - | |
Tan04g0828 | 1011 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 514 | 1006 | - | - | |
Tan04g0828 | 1011 | FunFam | Zinc finger protein-related isoform 1 | 947 | 996 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0828 | Tan-Chr4:7030918 | Tan04g0832 | Tan-Chr4:7030918 | 0.00E+00 | dispersed | |
Tan04g0827 | Tan-Chr4:7030918 | Tan04g0828 | Tan-Chr4:7030918 | 0.00E+00 | tandem | |
Tan04g0828 | Tan-Chr4:7030918 | Tan04g0829 | Tan-Chr4:7030918 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0828 | K16276 | - | csv:101217252 | 1779.61 |