Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0833 ATGTTAACCACGTTTACGCCCATTCATAACACCGACGGCGGCGGAGCCGTCGCCGCTACGGCTGCACCTCCTCCGGTGAACTCGGCAATGGAATCATGCTCGAGAATCTTCGACTTGGAGTCTCCTATTATCATATTTGTTTTCTTTCACAAGGCTATTCGCGCGGAGCTTGATCACTTCCATCGCGACGCCATGGAATTCGCCACCAACCAGCAAAGTGGCGGGGATATTGGGCCGTTGTTGCAGCGCTACCACTTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCTGAGGACGAGGTCATCTTCCCAGCTCTAGATCTGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGGGAAAGTGTTCTGTTTTGCCAATTGCTCGAGCTTCTGAATTCAAATGCCTTGGAGGAAGGAAGCTATAAGAGGGAGCTGTCATCTTGTGTCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAGGAACAGGTGTTTCCGTTACTTACTGAGAAGTTTTCTTTTGAAGAGCAGGCATCATTAGTTTGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGAGCAAATGCTTGAGCAAAATTATCCCCCAGCAAAAGCTTCTTCAGAAGGTCATATTTTCCTGGATGGAGAATGCAAGAACGACGTGTGCAAATCAAAGTTTGTATGATGACAATCTAGAGTTTCAATGTCTACACTCTCCGGTCCGTGATCTTATATGTAGGCCACAGAAGGGGAATAGCACTTCTGAATCAACTAGAAGTGGTAAAAGGAAATACGTGGAGCAATGTAATTTTACCTATTCTACTGCTTCAGTTGCTTGTCCCATCAACGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGGGACGTACCATTGTCTCCTGATTTTTCTGAGTTGTCTGCACTCAAGGAGAGGCTGCAGTTTATTGGGGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCATTTGCTGATCAGCACGCAGAAGAAGAAATCCAATTTGATAACCTTAGGCTCTTGATAGAAAGTATTCAAGCTGATAGACTTAAATATACTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAAAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTGGGACCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAACGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAGGCAAGATCGTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCGCTCGTTACACTATTTTCTGGTTGGGCATGCAAAGGCCATCCCATGAGCATTTGTATTTCTGCAAGTGCTATTAGCTATTGTCCTGAACGGATATTTACTGGAGATGAAGAATCATGCTCCTTTTCTTCTGCCAATGAAAAACCTTCATGCAATCAGGCAACTGAGTGTGCGAGGCTATCCAATTGTGGGAAGGCAGCATGCCATGGAGATTTAAATGGCCGTCTTCCTTTGAAAAACCCAAGCAAAAAACTTCATTTCACTCATGTAAAACAACTTGCTTGTGTTCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGACCCCTGGCAGCAGCAAAATCACTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTTCTCTCAACTCCAGTCTGTTTAGTCTGGAAAATGAACCAACCTCTTGTGGCAGTGGTTCTAAGTCACGGCCTATCGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTTGGTGATTGCGATGACAATTTCTTTAGGAAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTATATAAAGCTCATAGTAACGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTAAGCCACTCTTATACATTAGACCACAAACAAGAGGAAGAGCTTTTTGAAGGTATTTCTACTGCACTTTCTAAGCTGACAAATATTCGCAGAGACTTGAATGGTAAGAAAAAGTATGACTATTCAAATTGGACGAAGTCTCATACCTCTGATATTAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAGATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAGGAATCGGAGTTGTTGCCATTGTTTCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTCCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCGGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGACCTGCTACATCTCCACATTACATGGAAACTATCAGTCATATATCTGGAGGTTCTGATTCCCATGGCTTCTGTGACCAAAAAAATGATTCAGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAACGAAAATGAACTTGAATCGGAAATAAGAAAGGTTGCTCGGGATTCAACCATTGACCCTAGGAGAAAGGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCAACTACAGGTGAGAACTCAGATGCAAAAGAACTGATCGCAAGTGCCCCATCATTTCGTGATCCTAAGAAACAGACTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAGCTGCTTGCAACATGTTGCGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTCTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGCCCTTTCTGCAATATATGTCGTCTTGGGAAGGGGCTTGGTACTGATTTTTTTCATTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAGAGGGGCCTAGAAACAAATTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTTCCTTGTGGACATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAATCCTTAGGAGATATGACGGTGTACTTTGGCATGCTTGACGCATTACTGGCATTGGATGTACTCCCTGAAGAATACAGGGAACGCAGTCAGGATATATTGTGCAATGACTGCTCCAAGAAGGGGAAAGCTCGCTTCCACTGGCTGTACCATAAATGTGGAAATTGTGGATCTTATAATACCAAGGTGATTAAGGTTAGCTCAAGTTCGTGCTCAACATTGAATTAG 3714 41.65 MLTTFTPIHNTDGGGAVAATAAPPPVNSAMESCSRIFDLESPIIIFVFFHKAIRAELDHFHRDAMEFATNQQSGGDIGPLLQRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSCVRALQISICQHMFKEEEQVFPLLTEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQIMSKCLSKIIPQQKLLQKVIFSWMENARTTCANQSLYDDNLEFQCLHSPVRDLICRPQKGNSTSESTRSGKRKYVEQCNFTYSTASVACPINEILHWHNAIKKELNSIAEAARDVPLSPDFSELSALKERLQFIGEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDNLRLLIESIQADRLKYTSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLARKHLGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPMSICISASAISYCPERIFTGDEESCSFSSANEKPSCNQATECARLSNCGKAACHGDLNGRLPLKNPSKKLHFTHVKQLACVPGLGVDDNNLGMRPLAAAKSLRSLCFGPYAPSLNSSLFSLENEPTSCGSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCDDNFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISTALSKLTNIRRDLNGKKKYDYSNWTKSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTREEQNKMMDTLKQATRNTMFSDWLNEWWEGPATSPHYMETISHISGGSDSHGFCDQKNDSVFKPGWKEIFRMNENELESEIRKVARDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTGENSDAKELIASAPSFRDPKKQTFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGLSMAKYYCSICKLFDDEREVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALDVLPEEYRERSQDILCNDCSKKGKARFHWLYHKCGNCGSYNTKVIKVSSSSCSTLN 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7031172 7038964 + Tan0008373.1 Tan04g0833 749237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0833 1237 Pfam Zinc-ribbon 1167 1224 IPR039512 -
Tan04g0833 1237 ProSiteProfiles Zinc finger RING-type profile. 1120 1162 IPR001841 -
Tan04g0833 1237 SMART ring_2 1120 1161 IPR001841 -
Tan04g0833 1237 Gene3D nmb1532 protein domain like 308 454 - -
Tan04g0833 1237 Gene3D nmb1532 protein domain like 41 193 - -
Tan04g0833 1237 FunFam Zinc finger protein BRUTUS 642 872 - -
Tan04g0833 1237 ProSiteProfiles Zinc finger CHY-type profile. 984 1053 IPR008913 GO:0008270(InterPro)
Tan04g0833 1237 SUPERFAMILY CHY zinc finger-like 984 1047 IPR037274 GO:0008270(InterPro)
Tan04g0833 1237 CDD RING-H2_Pirh2-like 1119 1162 - -
Tan04g0833 1237 Pfam CHY zinc finger 991 1059 IPR008913 GO:0008270(InterPro)
Tan04g0833 1237 Gene3D - 1191 1233 - -
Tan04g0833 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1115 1164 IPR013083 -
Tan04g0833 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 682 1226 - -
Tan04g0833 1237 SUPERFAMILY RING/U-box 1119 1166 - -
Tan04g0833 1237 FunFam Zinc finger protein-related isoform 1 1115 1164 - -
Tan04g0833 1237 Pfam Ring finger domain 1119 1161 IPR001841 -
Tan04g0833 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1056 1119 IPR017921 -
Tan04g0833 1237 Gene3D nmb1532 protein domain like 642 867 - -
Tan04g0833 1237 Pfam Hemerythrin HHE cation binding domain 46 175 IPR012312 -
Tan04g0833 1237 Pfam Hemerythrin HHE cation binding domain 307 439 IPR012312 -
Tan04g0833 1237 Pfam Hemerythrin HHE cation binding domain 647 808 IPR012312 -
Tan04g0833 1237 CDD Hr-like 310 437 - -
Tan04g0833 1237 CDD Hr-like 651 807 - -
Tan04g0833 1237 CDD Hr-like 45 173 - -
Tan04g0833 1237 SUPERFAMILY Zinc hairpin stack 1057 1112 IPR037275 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0826 Tan-Chr4:7030918 Tan04g0833 Tan-Chr4:7031172 0.00E+00 dispersed
Tan04g0830 Tan-Chr4:7030918 Tan04g0833 Tan-Chr4:7031172 0.00E+00 dispersed
Tan04g0831 Tan-Chr4:7030918 Tan04g0833 Tan-Chr4:7031172 0.00E+00 dispersed
Tan04g0833 Tan-Chr4:7031172 Tan09g1882 Tan-Chr9:70042500 0.00E+00 dispersed
Tan04g0832 Tan-Chr4:7030918 Tan04g0833 Tan-Chr4:7031172 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0833 K16276 - csv:101217252 2135.92