Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0849 ATGAGAATGAGTTGCAATGGTTGTCGGATCCTTCGCAAAGGATGTAGCGATGATTGTATAATTAGACCTTGTCTTCAATGGATTCCCTCCGCTGATTCTCAGGCCAACGCCACCATTTTTCTCGCCAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCGAACATCTCCGCCCTGCCATTTTCAAGTCGTTGTTGTACGAGGCGTGCGGGCGGATGGTGAATCCTGTCCATGGTTCCGTCGGATTACTCTGCTCCGGCGACTGGGAAAGGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGAACGTCGAAACCGACGCGCCGCCATCAAACGCTCACCTCTCCCTCAAATACTGCGACATTCGCCATGTTTGTAACGACGCCAATTTGGCTGCTTCCGGCGAGCTTCACAAGGTCAAGGCTCGGAACCGGTTCAAGAAGCCTGATCACCGGACCAAACCCAAACCCGGACCGGCTCATGAATTGGGAAGTGGGTCTAATGTGGAGGAGTTAGAGGCAACGGGGCTGGAAATGGCTGAGGGTTTGATGATGAACCGGTGGAAACCGGCTCGAGTCTTGACAAATGGAAGCCGGTTTGAGGAGGCCGATGTTGAGCTGGAGCTGACTCTTAGTTCGGCTCAGTAG 666 55.11 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVHGSVGLLCSGDWERCQAAVDAVLTGSMNVETDAPPSNAHLSLKYCDIRHVCNDANLAASGELHKVKARNRFKKPDHRTKPKPGPAHELGSGSNVEELEATGLEMAEGLMMNRWKPARVLTNGSRFEEADVELELTLSSAQ 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7300669 7302263 + Tan0011435.1 Tan04g0849 749253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0849 221 MobiDBLite consensus disorder prediction 149 174 - -
Tan04g0849 221 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tan04g0849 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 217 - GO:0010468(PANTHER)
Tan04g0849 221 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0849 Tan-Chr4:7300669 Tan04g2009 Tan-Chr4:71656633 1.90E-54 dispersed
Tan04g0849 Tan-Chr4:7300669 Tan09g1917 Tan-Chr9:70201078 6.20E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27194 PF03195 LOB 1.40E-22 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0849 - - - 0.0