Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0859 ATGCCAGAGTACTGTGTAACCGGCGGCACTGGCTTCATAGCCTCTTACTTGGTGAAGACACTGCTCGAGAATGGCCACCGCGTTCGCACCACCGTTAGAAACCCAGGAGACAATGGAAGTGTTGGGTTTCTGTGGGAGTTTAATGGAGCTAAGGAGAGGCTGAAAATAGTAAAAGCTGATTTGCTAGAAGAAGGTAGCTTTGACGAGGCCATTCAAGGAGTGGATGGGGTCTTCCACACTGCTTCACCTGTTCTTGTTCCCTACGACAACAACATCAAGGCAACTCTGATTGATCCATGTATAAAGGGTACAATGAATGTACTAAATTCCTGTTTAAAAGCAACCAGTGTGAAACGAGTAGTGCTCACCTCTTCCTGCTCTGCAATTAGATATCGTTATGATGTCCAACAACTTTGTCCTCTCAACGAATCGCACTGGTCAGATCCTGAATATTGCAAGAACTACAATCTATGGTATGCATTTGCAAAGACTTTGGCAGAGAAAGAGGCTTGGCGTTTGGCAGGAGAACATGGGATGGATCTAGTTGTGGTGAACCCATCTTTCGTCGTTGGTCCTTTGCTTACTCCAAAACCAACCAGTACACAGCATCTCCTACTCACCATTATCAAAGGTGAAAGGGGCGAATATCCAAACTGCACGTTGGGGTTTGTGCACATAGATGATGTGGTAGCAGCGCACATCTTGGCAATAGAAGATCCAAAAGCATCCGGCAGGATCATATGTTCAAGCACAGTGGCTCACTGGTCACAGATCATTGACATGCTCAGGGCCAAATATCCATCCTACCCATTTGAAAACAAGCGCAGCGAACAGAAAGGAGATAGCAACCCTCACAACATGGACACGAGCAAGATTTCTGAATTGGGATTCCCAGCTTTCAAGACGCTCGAGCAAATGTTTGATGATTCAATCAAGAGTTTTCGAGACGAGGGATTTCTTTGA 963 45.79 MPEYCVTGGTGFIASYLVKTLLENGHRVRTTVRNPGDNGSVGFLWEFNGAKERLKIVKADLLEEGSFDEAIQGVDGVFHTASPVLVPYDNNIKATLIDPCIKGTMNVLNSCLKATSVKRVVLTSSCSAIRYRYDVQQLCPLNESHWSDPEYCKNYNLWYAFAKTLAEKEAWRLAGEHGMDLVVVNPSFVVGPLLTPKPTSTQHLLLTIIKGERGEYPNCTLGFVHIDDVVAAHILAIEDPKASGRIICSSTVAHWSQIIDMLRAKYPSYPFENKRSEQKGDSNPHNMDTSKISELGFPAFKTLEQMFDDSIKSFRDEGFL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7377453 7379792 + Tan0013472.1 Tan04g0859 749263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0859 320 FunFam Dihydroflavonol reductase 1 320 - -
Tan04g0859 320 CDD FR_SDR_e 4 297 - -
Tan04g0859 320 Pfam NAD dependent epimerase/dehydratase family 5 243 IPR001509 -
Tan04g0859 320 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 313 IPR050425 GO:0016616(PANTHER)
Tan04g0859 320 Gene3D - 2 320 - -
Tan04g0859 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 318 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0859 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0859 Tan-Chr4:7377453 Tan05g1027 Tan-Chr5:8501626 5.40E-74 dispersed
Tan04g0859 Tan-Chr4:7377453 Tan06g0468 Tan-Chr6:3411935 3.40E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g304 . . . . . . Bma14g01708 . . Cmo18g01034 . Cma18g01024 . Car18g00943 Sed06g1887 Cpe09g00299 . Bhi07g01326 Tan04g0859 Cmetu10g0120 Lac13g0491 . . . Cla05g02302 Cam05g2475 Cec05g2498 Cco05g2540 Clacu05g2470 Cmu05g2332 Cre05g2449 Cone13ag0832 . . . Lsi04g00257 Csa05g02609 Chy10g01144 Cme10g00263 . Blo11g00754 Bda07g01535 . Bpe11g01623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007652 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 36