Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0868 ATGATAAGGACCCTCTTGCAGGCACCACAGAACACTGCCCCTGCACCTGCTGCCACTCCAGTCTCAACATCTGAAGTTCCTCTACCAACTTCAGCACCGCCGGCAACTATTACTGACTCTTCTCCCCCGGCTCCGGCTCCAGTTCCAGCTCCAACTCCGGCGCCCGCAACCACTGTTTTGCCAGAATCTGATGTCTACAGCCAAGCAGCTTCTAACCTGGTTGCCGGTAGTAACTTGGAGGAGACCATCCAACAGATTCTTCTGATGGGTGGAGGGATTTGGGATAGGGATACTGTTGTTCGAGCTCTTCGTGCTGCTTACAATAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGCATACCTGAACAAGTTGAAGTTCCACCTGCTGCTCGAGCTCCGTCTACTGTTCCAGCAACCAATCCTTCTGCTCAACCTGCACAGCCAGCCCAACCTGCGTCTGTGCCATCAACTGGTCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTGCCTAATTTAGCTTCCGGAGCTGTTGGTTCTGGCAGTCTAGATTTCCTACGAAATAGTCCTCAGTTCCAAGCTCTGCGAGCCATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGTTGATTCGACTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGGCAACTTGGCGAGGCTATGCCGCAGGCTATCACTGTAACCCCAGAGGAGCGTGAAGCGATTCAACGGCTTGAGGATTTGGGTTTCGACAGAGCTCTAGTAGTGGAGGTTTTCTTTGCCTGCAACAAGAACGAGGAAATGGCTGCCAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAG 939 49.73 MIRTLLQAPQNTAPAPAATPVSTSEVPLPTSAPPATITDSSPPAPAPVPAPTPAPATTVLPESDVYSQAASNLVAGSNLEETIQQILLMGGGIWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEVPPAARAPSTVPATNPSAQPAQPAQPASVPSTGPNANPLDLFPQGVPNLASGAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLGEAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7458821 7469037 + Tan0010031.2 Tan04g0868 749272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0868 312 MobiDBLite consensus disorder prediction 1 58 - -
Tan04g0868 312 SMART CBM 183 226 IPR006636 -
Tan04g0868 312 Pfam XPC-binding domain 185 240 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Tan04g0868 312 NCBIfam UV excision repair protein Rad23 12 308 IPR004806 GO:0006289(InterPro)
Tan04g0868 312 SUPERFAMILY UBA-like 76 127 IPR009060 GO:0005515(InterPro)
Tan04g0868 312 FunFam UV excision repair protein RAD23 homolog 256 304 - -
Tan04g0868 312 MobiDBLite consensus disorder prediction 130 167 - -
Tan04g0868 312 Gene3D - 72 122 - -
Tan04g0868 312 Gene3D - 175 240 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Tan04g0868 312 MobiDBLite consensus disorder prediction 136 164 - -
Tan04g0868 312 FunFam UV excision repair protein RAD23 B 176 241 - -
Tan04g0868 312 MobiDBLite consensus disorder prediction 36 56 - -
Tan04g0868 312 FunFam UV excision repair protein RAD23 homolog 72 122 - -
Tan04g0868 312 SUPERFAMILY UBA-like 246 307 IPR009060 GO:0005515(InterPro)
Tan04g0868 312 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 77 120 IPR015940 -
Tan04g0868 312 PANTHER UV EXCISION REPAIR PROTEIN RAD23 38 301 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Tan04g0868 312 Gene3D - 257 304 - -
Tan04g0868 312 PRINTS DNA repair protein Rad23 signature 211 233 IPR004806 GO:0006289(InterPro)
Tan04g0868 312 PRINTS DNA repair protein Rad23 signature 259 275 IPR004806 GO:0006289(InterPro)
Tan04g0868 312 PRINTS DNA repair protein Rad23 signature 291 306 IPR004806 GO:0006289(InterPro)
Tan04g0868 312 PRINTS DNA repair protein Rad23 signature 276 290 IPR004806 GO:0006289(InterPro)
Tan04g0868 312 SUPERFAMILY XPC-binding domain 181 246 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Tan04g0868 312 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 262 303 IPR015940 -
Tan04g0868 312 Pfam UBA/TS-N domain 80 117 IPR015940 -
Tan04g0868 312 Pfam UBA/TS-N domain 265 300 IPR015940 -
Tan04g0868 312 SMART uba_6 265 302 IPR015940 -
Tan04g0868 312 SMART uba_6 79 119 IPR015940 -
Tan04g0868 312 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0868 K10839 - - csv:101220491 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0868 Tan-Chr4:7458821 Tan07g1292 Tan-Chr7:59935380 1.30E-77 dispersed
Tan04g0867 Tan-Chr4:7458821 Tan04g0868 Tan-Chr4:7458821 4.40E-158 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41