Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0874 ATGCTCTACCAAACTGACAGTGGCTGTAAGCATGGCAATGATGTTAGCTTTTCCAGAAGTGAAGTGACTGGAACTAAATATAATGATCTTGAACCCTGTCTAGAGGGTCATAGGAAAGGGGATTTTGATAAAGAATCTCTAGAGTTAGATGAGAATCGGCACAAACAAATGTTATCTCCTTCCAAAGGCGGTAGTAAGAAAATAAGCAACATTGACAATCGAAAAGTGGCAACAGATGGAAGCACCTTGGGGAATTCGAAACGGTCGCAGTTAGAAAGGACTGAAGTCAAGTCCCAAGATTTTACACCATCAACATCTCATGATCGATTCATTGACGCATCAGATTGTAGGAGTAGATCAAGGTCAAATTGTCACTCTAGAGGCCAATCCCAGTCTCATGAAACAGTAGAAGAGGAGGCGGAGTCAAAGAGGAGTCATCATCATGGTTGGGATCGTTCGGTATTTGATGAATATGCTAGGGGAGAGGGAAGGCATCGGAGCAGGGATACGAAGGACAGAGGGAGAAGTAAGATGGATGTGGATAGGGACTGGTCAAAGGAAAATGAATGGGAAAAAAACAAAGATAAAGATAGTGGGATAGATAAACACAAGTATGATGAAAGAGAGAGAGGGAGGAGTAGGGATAGAAGAAAGGAGGTAGAACGAAATAGGAGCAGGGAAAGAGAGTTGGATAGGGATAGGAGGAGGGAAAGGGATGTGGAAAGAGATAGGAGAGTGAAGGAAAGGGGTTGGAGTAGGGAAAGAGAGGCAGAAAGAGAGAGAAGAGTTGATAAGGAAAGAGGTTGGAGTAGGGAAAGAGAGGTAGAAAGGGATAGAAGAATGGAGAAGGAAAGAGAGGTTGACAGGGATAGAAGAGCAGAAAAGGAAAGATGTAGGAGCGCAGATAGAGATGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGCAAGGACAAAGAAGTGGATTGGGATGGGAGAAGGGATAGAGACAGAGCTCGGAATGATGATAAGGCTGAATATAGTGATAGAAACAGAGACAAGGAAAAAGTGAGAGAGATCCAAAAAGACCGGATTAGGGATAAAGAGTTAGATAGGGAGAGACGAGATGATAGAAATAAGAATAAAGCCAGTGATATTTTAAGTAGTAAGGATAAGTATGGGAACCTTGAACACGGCTATGCTAAAGTTTCTAGTAAGCAGTCTAGACATTATGATAATGAATCTGGTCAGAATGGGGGAAAAATTAATGTTTTTGAAAAGCATGGTAGTTTTAAGAGAAATGCTCTTGAAGGAGGTGACGACAAGCTAACGAGTGATCACAATGAGGAGGAAGAGGATGAGGACAGTATGCCATTTCAATTTGCTGATCAAGAAGAGGAGGATCTTAACAGAATCAAGGAGGAGAGTAGAAGACGGAGGCAAGCAATCTTAGAAAAATACAAATGTCAGCAGTTAGAGAAACAAGTAGAGGCTTCTTTGAAAGAATCTGAGAAAGATAAGGATTCTGCAAATGATTCTTCTCAATCAGAAGCTGCTGCTCATGCCATTCCAGAATTGGTTGATGGAGTGGTGGATGACAGTGTTGCTGACTCATCTTTTGTTGTGGAGAAATCATCACAACTAAATGGAATAGCTGCGTCTGATAAAACTGTTGGTACTAAAGGTCTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGATTATTCTGTGATGATATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGAGATGGTTTGTGGATAGAGAAGAGTGGACTTCATGACAATTGGGATGATGCAGATGGATATTATAACTATCGATTTGGTGAGGTACTTGATGGTCGGTATGAAGTTGCTGCAGCTCATGGCAAAGGTGTCTTTTCAACTGTGGTCCGTGCCAAGGATCTCAAAGCTGGACATGGAGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACGATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAATTGTGGTGTTCTACATTGTGACATAAAGCCGGATAATATGCTGGTTAATGAGGGAAAAAACGTGCTGAAGCTTTGTGATTTTGGAAATGCCATGTTTGCTGGTAAAAACGAAATCACCCCATACCTTGTTAGCCGGTTTTATCGTGCCCCTGAAATAATTTTAGGGCTGCCATATGACCACCCAATGGATATTTGGTCTGTGGGTTGCTGTTTGTACGAGCTGTCTACAGGAAAAGTCCTTTTTCCAGGTCCTTCTAATAATGACATGCTGCGCCTACACATGGAATTAAAGGGCCCTTTTCCGAAGAAGATGCTTCGTAAGGGAGCATTTACCGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTTACCAAAAAGACTATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAAAGGATGACAGTATCACAAGCATTGAACCATCCATTCATCACTGGCAAGTGA 2826 41.61 MLYQTDSGCKHGNDVSFSRSEVTGTKYNDLEPCLEGHRKGDFDKESLELDENRHKQMLSPSKGGSKKISNIDNRKVATDGSTLGNSKRSQLERTEVKSQDFTPSTSHDRFIDASDCRSRSRSNCHSRGQSQSHETVEEEAESKRSHHHGWDRSVFDEYARGEGRHRSRDTKDRGRSKMDVDRDWSKENEWEKNKDKDSGIDKHKYDERERGRSRDRRKEVERNRSRERELDRDRRRERDVERDRRVKERGWSREREAERERRVDKERGWSREREVERDRRMEKEREVDRDRRAEKERCRSADRDGNRDRRREREKDRSKDKEVDWDGRRDRDRARNDDKAEYSDRNRDKEKVREIQKDRIRDKELDRERRDDRNKNKASDILSSKDKYGNLEHGYAKVSSKQSRHYDNESGQNGGKINVFEKHGSFKRNALEGGDDKLTSDHNEEEEDEDSMPFQFADQEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEASLKESEKDKDSANDSSQSEAAAHAIPELVDGVVDDSVADSSFVVEKSSQLNGIAASDKTVGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKGDGLWIEKSGLHDNWDDADGYYNYRFGEVLDGRYEVAAAHGKGVFSTVVRAKDLKAGHGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLPYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGK 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7494532 7504825 + Tan0001679.2 Tan04g0874 749278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0874 941 MobiDBLite consensus disorder prediction 492 507 - -
Tan04g0874 941 FunFam serine/threonine-protein kinase PRP4 homolog 594 682 - -
Tan04g0874 941 Coils Coil 457 477 - -
Tan04g0874 941 MobiDBLite consensus disorder prediction 131 404 - -
Tan04g0874 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0874 941 CDD STKc_PRP4 622 938 IPR044092 GO:0004674(InterPro)|GO:0006468(InterPro)|GO:0045292(InterPro)
Tan04g0874 941 Pfam Protein kinase domain 624 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0874 941 FunFam Serine/threonine-protein kinase PRP4 homolog 683 939 - -
Tan04g0874 941 MobiDBLite consensus disorder prediction 492 520 - -
Tan04g0874 941 MobiDBLite consensus disorder prediction 74 89 - -
Tan04g0874 941 ProSiteProfiles Protein kinase domain profile. 623 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0874 941 MobiDBLite consensus disorder prediction 31 57 - -
Tan04g0874 941 MobiDBLite consensus disorder prediction 441 457 - -
Tan04g0874 941 MobiDBLite consensus disorder prediction 421 440 - -
Tan04g0874 941 SUPERFAMILY Protein kinase-like (PK-like) 610 940 IPR011009 -
Tan04g0874 941 Gene3D Phosphorylase Kinase; domain 1 594 682 - -
Tan04g0874 941 MobiDBLite consensus disorder prediction 1 25 - -
Tan04g0874 941 MobiDBLite consensus disorder prediction 1 469 - -
Tan04g0874 941 SMART serkin_6 623 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0874 941 Coils Coil 488 508 - -
Tan04g0874 941 PANTHER DUAL SPECIFICITY PROTEIN KINASE 301 940 IPR050494 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Tan04g0874 941 Gene3D Transferase(Phosphotransferase) domain 1 683 939 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0874 K08827 - - csv:101220260 1426.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0874 Tan-Chr4:7494532 Tan04g0876 Tan-Chr4:7494532 0.00E+00 dispersed
Tan04g0873 Tan-Chr4:7494532 Tan04g0874 Tan-Chr4:7494532 0.00E+00 tandem
Tan04g0874 Tan-Chr4:7494532 Tan04g0875 Tan-Chr4:7494532 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67435 PF00069 Pkinase 1.10E-46 CL0016 Tan PK