Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0891 ATGGCGAACATTTCTTTCTTCCTTCTTACCGTTCTTTTCGCCTCTTTTTCCGGCGGTCTCTCCCGGAGTTTGCTCCAGAGGCCTAAAACCTCTGTGCTTGATGTGGCGGCTTCGATTCAGAGGACTAATGAGATTTTCGCATTTGAGGCTAAATCTCCGGTTGAAGATGAAAAACCCATCTCGGATTCATCTTCCTTGACTCTGCAGTTGAATTCGAGGATTTCGATTGTGAAAACCTCGCATAGTGACTACAAATCGCTTACATTATCCAGACTGAGGCGCGACTCTGCTCGAGTCAGATCTTTGACTGCCAGGATAGATCTTGCCCTTCGAGGCATTACTGGAGCGGATCTTGAACCTTTCGAAAATGGCGGTGGTTCGCAATTTGGGACTGAGGATTTCGAGAGTCCGATTGTGTCAGGCGCGAGTCAGGGGAGCGGTGAGTATTTTTCTCGAGTTGGAATCGGCAGGCCGCCGAATCCGGTTTATATGGTGCTTGATACTGGCAGTGATGTAAGTTGGGTACAATGTTCGCCTTGTGCTGATTGTTACGAGCAAACGGATCCCATTTTTGAGCCGGCGTCATCTACTTCTTTTTCATCTCTGTCCTGCGAAACAGAGCAATGCAAATCGCTCGATGTTTCCGAGTGCCGGAATGGTACTTGCCTTTACGAGGTCTCTTACGGCGACGGCTCTTATACCGTCGGTGATTTCGTAACTGAAACTGTTACGCTCGGCTCGACTTCTCTCAGTAACATTGCCCTAGGTTGCGGCCATAACAATGAGGGGTTGTTCGTTGGCGCCGCTGGCTTGCTCGGACTCGGCGGCGGCTCGCTTTCGTTTCCTTCTCAACTCAATGCCTCGTCGTTCTCGTACTGTCTCGTGGACCGTGACTCCGATTCGGCCTCGACTCTCGATTTCAACTCCCCGATTTCTCCCGATGCTGTAACCGCGCCGCTGCACCGGAACCCTAATTTGGACACTTTTTTCTATCTCGGTGTGACGGGACTGAGCGTCGGAGGTGAGATTCTTCCGATTTCCGAGACGTTGTTTGAAATGAGCCAAGACGGAAGCGGCGGGATCATCATCGACTCCGGCACCGCCGTGACGCGGCTGCAGACAACCGTTTACAACTTGCTGCGCGACGCCTTCGTTAAGAGCACGCACGATTTGCAGTCCACACGTGGCGTGGCGTTGTTCGATACTTGTTACGACTTGTCGTCGAAGTCGAGAGTCGAGGTGCCGACGGTGTCGTTTCACTTCGCCGACGGGAAGGAGTTGCCGTTGCCGGCCAAGAATTACCTGATACCGGTTGACTCGGATGGGACTTTTTGTTTCGCGTTCGCGCCTACGGATTCCACGTTGTCAATCCTCGGGAACGCACAGCAGCAAGGGACACGTGTCGGTTTCGACCTCGCTAATTCGCTCGTTGGGTTCTCGGCCAACAAATGCTAA 1455 52.37 MANISFFLLTVLFASFSGGLSRSLLQRPKTSVLDVAASIQRTNEIFAFEAKSPVEDEKPISDSSSLTLQLNSRISIVKTSHSDYKSLTLSRLRRDSARVRSLTARIDLALRGITGADLEPFENGGGSQFGTEDFESPIVSGASQGSGEYFSRVGIGRPPNPVYMVLDTGSDVSWVQCSPCADCYEQTDPIFEPASSTSFSSLSCETEQCKSLDVSECRNGTCLYEVSYGDGSYTVGDFVTETVTLGSTSLSNIALGCGHNNEGLFVGAAGLLGLGGGSLSFPSQLNASSFSYCLVDRDSDSASTLDFNSPISPDAVTAPLHRNPNLDTFFYLGVTGLSVGGEILPISETLFEMSQDGSGGIIIDSGTAVTRLQTTVYNLLRDAFVKSTHDLQSTRGVALFDTCYDLSSKSRVEVPTVSFHFADGKELPLPAKNYLIPVDSDGTFCFAFAPTDSTLSILGNAQQQGTRVGFDLANSLVGFSANKC 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7579783 7581524 - Tan0018425.1 Tan04g0891 749295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0891 484 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 164 175 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Tan04g0891 484 SUPERFAMILY Acid proteases 143 484 IPR021109 -
Tan04g0891 484 Gene3D Acid Proteases 308 484 IPR021109 -
Tan04g0891 484 Gene3D Acid Proteases 127 307 IPR021109 -
Tan04g0891 484 ProSiteProfiles Peptidase family A1 domain profile. 149 480 IPR033121 -
Tan04g0891 484 Pfam Xylanase inhibitor C-terminal 330 480 IPR032799 -
Tan04g0891 484 FunFam Probable aspartic protease At2g35615 129 308 - -
Tan04g0891 484 FunFam Aspartyl protease family protein 2 309 484 - -
Tan04g0891 484 Pfam Xylanase inhibitor N-terminal 149 305 IPR032861 -
Tan04g0891 484 PANTHER ASPARTYL PROTEASES 54 484 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0891 K22683 - - csv:101222856 806.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0177 Tan-Chr3:29540714 Tan04g0891 Tan-Chr4:7579783 7.50E-67 dispersed
Tan03g0178 Tan-Chr3:29541103 Tan04g0891 Tan-Chr4:7579783 2.00E-69 dispersed
Tan04g0439 Tan-Chr4:3656627 Tan04g0891 Tan-Chr4:7579783 3.40E-112 dispersed
Tan04g0891 Tan-Chr4:7579783 Tan05g2284 Tan-Chr5:74179043 1.00E-164 dispersed
Tan01g0474 Tan-Chr1:4353234 Tan04g0891 Tan-Chr4:7579783 7.80E-46 transposed
Tan04g0891 Tan-Chr4:7579783 Tan05g2279 Tan-Chr5:74115598 5.80E-19 wgd
Tan04g0891 Tan-Chr4:7579783 Tan09g1929 Tan-Chr9:70279740 7.60E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66