Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0896 ATGGATTTCGTTGATCATGTTCTGGATATTCGAGTTGGAATGGATTTGACGCACTATGCCGATGCTTTAGATCAAGAACGCAGAAAAATTCAGGTCTTTCAGCGGGAACTTCCCCTCTGTTTGGAGCTAGTTACCAGAGCAATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACGGAGAGTTCAGAGCATACTTCTAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAAAAAGCTTCTGGTAATTCTCATTTTGAAAATGAAGAAGATGAACAATTTAAACCAGAGAAAAATGAAGTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAATCACCGGATCCTCCCGTTATAGAGGATGTTGCTAAGGAAACGACGTCGTCCGTTGTTGAGGTCAAAAAGAATGGCGGTGGCGGTGCTTTTCAGCCATTTCAGAAGGAGAAAATTCCATTGAAAACAGAGGCGGTGGTCGTCGGTAAAACGCTCGGTTGTTCTCCGGTGTCGGAGGCGACGACGAGTTCGACGGCGGAAACTGCCTCCAAAGGTAGCGGCGGAACCAGCAAACGAGAAGATAAGGAATCTCAGACTCCAAGAAAACAGAGACGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATGCCCTTCAACAACTCGGCGGTCCTCATGTTGCTACACCGAAACAAATCAGAGACTTGATGAAGGTCGATGGCCTCACGAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGACCAGCAAATTCTGCAATGCAAGACAGCGGTAGCTCATCACCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTACCGCCGCCGCCGCCGCCGAAGTACACGGCGGCAACGACGGGGCAAGTGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTGCGGCGGCAAAGAACGGGGGAGGAAGGGAATGGGAGGCACAGCGGCGGAGTGGTTCAATCGAATTCGTCGGCGACGTCTTCGTCGACTCGCACCACTACAACCTCGCCGGCGGCGGCGTAG 1071 51.45 MDFVDHVLDIRVGMDLTHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDGPVLEEFIPIKKASGNSHFENEEDEQFKPEKNEVGRSDWLKSAQLWNQSPDPPVIEDVAKETTSSVVEVKKNGGGGAFQPFQKEKIPLKTEAVVVGKTLGCSPVSEATTSSTAETASKGSGGTSKREDKESQTPRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHARRPANSAMQDSGSSSPPQQFVVVGSIWVPPPPPPKYTAATTGQVRNGIYAPVATAVRRQRTGEEGNGRHSGGVVQSNSSATSSSTRTTTTSPAAA 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7666739 7668774 - Tan0009811.1 Tan04g0896 749300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0896 356 MobiDBLite consensus disorder prediction 331 356 - -
Tan04g0896 356 MobiDBLite consensus disorder prediction 190 211 - -
Tan04g0896 356 SUPERFAMILY Homeodomain-like 202 263 IPR009057 -
Tan04g0896 356 MobiDBLite consensus disorder prediction 319 356 - -
Tan04g0896 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 332 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0896 356 MobiDBLite consensus disorder prediction 172 189 - -
Tan04g0896 356 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Tan04g0896 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Tan04g0896 356 Gene3D - 204 261 - -
Tan04g0896 356 FunFam Myb family transcription factor 204 262 - -
Tan04g0896 356 MobiDBLite consensus disorder prediction 172 211 - -
Tan04g0896 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0896 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0896 Tan-Chr4:7666739 Tan08g0199 Tan-Chr8:1793984 1.80E-41 dispersed
Tan11g1867 Tan-Chr11:24114385 Tan04g0896 Tan-Chr4:7666739 1.80E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27200 None None None None Tan TF