Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0896 ATGGATTTCGTTGATCATGTTCTGGATATTCGAGTTGGAATGGATTTGACGCACTATGCCGATGCTTTAGATCAAGAACGCAGAAAAATTCAGGTCTTTCAGCGGGAACTTCCCCTCTGTTTGGAGCTAGTTACCAGAGCAATTGATTCTTGCCGGCAGCAGTTATCTGGGGTGTCGACGGAGAGTTCAGAGCATACTTCTAGCGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAAAAAGCTTCTGGTAATTCTCATTTTGAAAATGAAGAAGATGAACAATTTAAACCAGAGAAAAATGAAGTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAATCACCGGATCCTCCCGTTATAGAGGATGTTGCTAAGGAAACGACGTCGTCCGTTGTTGAGGTCAAAAAGAATGGCGGTGGCGGTGCTTTTCAGCCATTTCAGAAGGAGAAAATTCCATTGAAAACAGAGGCGGTGGTCGTCGGTAAAACGCTCGGTTGTTCTCCGGTGTCGGAGGCGACGACGAGTTCGACGGCGGAAACTGCCTCCAAAGGTAGCGGCGGAACCAGCAAACGAGAAGATAAGGAATCTCAGACTCCAAGAAAACAGAGACGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATGCCCTTCAACAACTCGGCGGTCCTCATGTTGCTACACCGAAACAAATCAGAGACTTGATGAAGGTCGATGGCCTCACGAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGACCAGCAAATTCTGCAATGCAAGACAGCGGTAGCTCATCACCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTACCGCCGCCGCCGCCGCCGAAGTACACGGCGGCAACGACGGGGCAAGTGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTGCGGCGGCAAAGAACGGGGGAGGAAGGGAATGGGAGGCACAGCGGCGGAGTGGTTCAATCGAATTCGTCGGCGACGTCTTCGTCGACTCGCACCACTACAACCTCGCCGGCGGCGGCGTAG 1071 51.45 MDFVDHVLDIRVGMDLTHYADALDQERRKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDGPVLEEFIPIKKASGNSHFENEEDEQFKPEKNEVGRSDWLKSAQLWNQSPDPPVIEDVAKETTSSVVEVKKNGGGGAFQPFQKEKIPLKTEAVVVGKTLGCSPVSEATTSSTAETASKGSGGTSKREDKESQTPRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHARRPANSAMQDSGSSSPPQQFVVVGSIWVPPPPPPKYTAATTGQVRNGIYAPVATAVRRQRTGEEGNGRHSGGVVQSNSSATSSSTRTTTTSPAAA 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7666739 7668774 - Tan0009811.1 Tan04g0896 749300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0896 356 MobiDBLite consensus disorder prediction 331 356 - -
Tan04g0896 356 MobiDBLite consensus disorder prediction 190 211 - -
Tan04g0896 356 SUPERFAMILY Homeodomain-like 202 263 IPR009057 -
Tan04g0896 356 MobiDBLite consensus disorder prediction 319 356 - -
Tan04g0896 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 332 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0896 356 MobiDBLite consensus disorder prediction 172 189 - -
Tan04g0896 356 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Tan04g0896 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Tan04g0896 356 Gene3D - 204 261 - -
Tan04g0896 356 FunFam Myb family transcription factor 204 262 - -
Tan04g0896 356 MobiDBLite consensus disorder prediction 172 211 - -
Tan04g0896 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0896 Tan-Chr4:7666739 Tan08g0199 Tan-Chr8:1793984 1.80E-41 dispersed
Tan11g1867 Tan-Chr11:24114385 Tan04g0896 Tan-Chr4:7666739 1.80E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27200 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0896 - - - 0.0