Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g0897 | ATGGATGGAATTTGCATTGACGAAAGCACCACTTCCACTGAATCTCAATCCCAATTATCCACGACTTTCCCAGTGTTCAAATCTCCGGTGCCGGACACCAGTCTCTGCCGCGTCGGGAGCGGCGCCACTAGTGTGGTATTGGACTCCGCCGACTCCAGCAGCGGCGGTGGCGGCGTCGAGGCGGAGTCACGAAAACTGCCGTCCTCCCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGGTGGGGGGCACAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGGACCTTCAACGAAGAGGACGAAGCGGCACGTGCCTACGACGTGGCCGCCCAACGCTTCCGCGGCCGTGACGCTGTCACAAATTTCAAACCGTTATCTCACGGCCGGGAAGAAGAAGAAGAAGACGACGTCGTAGTATCCGCCTTCCTGAACTCCCATTCCAAGGCCGAGATCGTCGACATGCTACGTAAGCACACCTACCTGGACGAGCTCCAGCAAAGCAAACGAAACGCCGGGTTGTTCGGTTCGGATCGGAAAAGAAACCGTTTCCTTTCGGGTTCGGACAATGACACGGAAACCGCTCGCGAACTTCTATTCGAAAAGGCCGTTACCCCAAGCGATGTGGGAAAATTGAACCGTTTGGTCATCCCAAAACAACACGCCGAAAAAAACTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTCCTCTTGAACTTCGAAGATGGAGGCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTGTTGACCAAAGGCTGGAGCCGGTTCGTGAAGGAAAAGAATCTGAAAGCCGGTGACATTGTCAGCTTCTTGAAATCAACCGGTCAAGACAAACAGCTTTACATCGAATGGAATGCCAGAAAGACTCCGCCCACAACCGGGTCCAATATGAACCCGGTTCAGACCGTGAGATTATTCGGAGTGGACATTATCAAAGTCTCGCCAAATACTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTCTCACTTTACAATGTACCAAAAAACAAAGGATAGTCGGAGCATTGTAA | 1089 | 52.89 | MDGICIDESTTSTESQSQLSTTFPVFKSPVPDTSLCRVGSGATSVVLDSADSSSGGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGREEEEEDDVVVSAFLNSHSKAEIVDMLRKHTYLDELQQSKRNAGLFGSDRKRNRFLSGSDNDTETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWNARKTPPTTGSNMNPVQTVRLFGVDIIKVSPNTGCSEKRRREMEFLTLQCTKKQRIVGAL | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7685937 | 7687660 | - | Tan0020251.1 | Tan04g0897 | 749301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g0897 | 362 | SUPERFAMILY | DNA-binding pseudobarrel domain | 199 | 291 | IPR015300 | - | |
Tan04g0897 | 362 | SMART | rav1_2 | 70 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0897 | 362 | SUPERFAMILY | DNA-binding domain | 69 | 125 | IPR016177 | GO:0003677(InterPro) | |
Tan04g0897 | 362 | ProSiteProfiles | B3 DNA-binding domain profile. | 201 | 306 | IPR003340 | GO:0003677(InterPro) | |
Tan04g0897 | 362 | CDD | AP2 | 69 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0897 | 362 | Gene3D | - | 188 | 313 | IPR015300 | - | |
Tan04g0897 | 362 | FunFam | AP2 domain-containing protein RAP2.8 | 69 | 126 | - | - | |
Tan04g0897 | 362 | CDD | B3_DNA | 200 | 288 | IPR003340 | GO:0003677(InterPro) | |
Tan04g0897 | 362 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 125 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0897 | 362 | SMART | B3_2 | 201 | 306 | IPR003340 | GO:0003677(InterPro) | |
Tan04g0897 | 362 | Pfam | AP2 domain | 69 | 117 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan04g0897 | 362 | Pfam | B3 DNA binding domain | 201 | 302 | IPR003340 | GO:0003677(InterPro) | |
Tan04g0897 | 362 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Tan04g0897 | 362 | MobiDBLite | consensus disorder prediction | 47 | 72 | - | - | |
Tan04g0897 | 362 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 69 | 328 | IPR044800 | GO:0003700(InterPro) | |
Tan04g0897 | 362 | Gene3D | AP2/ERF domain | 69 | 126 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0897 | Tan-Chr4:7685937 | Tan11g1931 | Tan-Chr11:29672929 | 2.70E-106 | dispersed | |
Tan11g1937 | Tan-Chr11:30080991 | Tan04g0897 | Tan-Chr4:7685937 | 1.80E-09 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27201 | PF02362 | B3 | 1.30E-27 | CL0405 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g0897 | K09287 | - | csv:101203784 | 601.668 |