Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0897 ATGGATGGAATTTGCATTGACGAAAGCACCACTTCCACTGAATCTCAATCCCAATTATCCACGACTTTCCCAGTGTTCAAATCTCCGGTGCCGGACACCAGTCTCTGCCGCGTCGGGAGCGGCGCCACTAGTGTGGTATTGGACTCCGCCGACTCCAGCAGCGGCGGTGGCGGCGTCGAGGCGGAGTCACGAAAACTGCCGTCCTCCCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGGTGGGGGGCACAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGGACCTTCAACGAAGAGGACGAAGCGGCACGTGCCTACGACGTGGCCGCCCAACGCTTCCGCGGCCGTGACGCTGTCACAAATTTCAAACCGTTATCTCACGGCCGGGAAGAAGAAGAAGAAGACGACGTCGTAGTATCCGCCTTCCTGAACTCCCATTCCAAGGCCGAGATCGTCGACATGCTACGTAAGCACACCTACCTGGACGAGCTCCAGCAAAGCAAACGAAACGCCGGGTTGTTCGGTTCGGATCGGAAAAGAAACCGTTTCCTTTCGGGTTCGGACAATGACACGGAAACCGCTCGCGAACTTCTATTCGAAAAGGCCGTTACCCCAAGCGATGTGGGAAAATTGAACCGTTTGGTCATCCCAAAACAACACGCCGAAAAAAACTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTCCTCTTGAACTTCGAAGATGGAGGCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTGTTGACCAAAGGCTGGAGCCGGTTCGTGAAGGAAAAGAATCTGAAAGCCGGTGACATTGTCAGCTTCTTGAAATCAACCGGTCAAGACAAACAGCTTTACATCGAATGGAATGCCAGAAAGACTCCGCCCACAACCGGGTCCAATATGAACCCGGTTCAGACCGTGAGATTATTCGGAGTGGACATTATCAAAGTCTCGCCAAATACTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTCTCACTTTACAATGTACCAAAAAACAAAGGATAGTCGGAGCATTGTAA 1089 52.89 MDGICIDESTTSTESQSQLSTTFPVFKSPVPDTSLCRVGSGATSVVLDSADSSSGGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGREEEEEDDVVVSAFLNSHSKAEIVDMLRKHTYLDELQQSKRNAGLFGSDRKRNRFLSGSDNDTETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWNARKTPPTTGSNMNPVQTVRLFGVDIIKVSPNTGCSEKRRREMEFLTLQCTKKQRIVGAL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7685937 7687660 - Tan0020251.1 Tan04g0897 749301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0897 362 SUPERFAMILY DNA-binding pseudobarrel domain 199 291 IPR015300 -
Tan04g0897 362 SMART rav1_2 70 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0897 362 SUPERFAMILY DNA-binding domain 69 125 IPR016177 GO:0003677(InterPro)
Tan04g0897 362 ProSiteProfiles B3 DNA-binding domain profile. 201 306 IPR003340 GO:0003677(InterPro)
Tan04g0897 362 CDD AP2 69 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0897 362 Gene3D - 188 313 IPR015300 -
Tan04g0897 362 FunFam AP2 domain-containing protein RAP2.8 69 126 - -
Tan04g0897 362 CDD B3_DNA 200 288 IPR003340 GO:0003677(InterPro)
Tan04g0897 362 ProSiteProfiles AP2/ERF domain profile. 70 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0897 362 SMART B3_2 201 306 IPR003340 GO:0003677(InterPro)
Tan04g0897 362 Pfam AP2 domain 69 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0897 362 Pfam B3 DNA binding domain 201 302 IPR003340 GO:0003677(InterPro)
Tan04g0897 362 MobiDBLite consensus disorder prediction 1 20 - -
Tan04g0897 362 MobiDBLite consensus disorder prediction 47 72 - -
Tan04g0897 362 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 69 328 IPR044800 GO:0003700(InterPro)
Tan04g0897 362 Gene3D AP2/ERF domain 69 126 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0897 Tan-Chr4:7685937 Tan11g1931 Tan-Chr11:29672929 2.70E-106 dispersed
Tan11g1937 Tan-Chr11:30080991 Tan04g0897 Tan-Chr4:7685937 1.80E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27201 PF02362 B3 1.30E-27 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0897 K09287 - csv:101203784 601.668