Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0901 ATGCGTGGGGAGGATCAAGAAGAAGAGCATCGTCATCATCATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAGCTACAAAACAATAACAACAACAACAACACTGATCATATTATATATGGAGATCATCTCCATCATGGAACTGGAAGAGGGTTGATTTTCCCGGCCGAAGTCGTGTCGCCGGTTCTGCAGCCATGGCCACCGCTCAACCCATTTTTGATCCCTCCTCCACCTCCGCCGCCGCCACCGACATCATTATGCTCGTCGTCGTCATACGGTAGTTTGTTTAACCGGAGACCTCCTAATTGTCTTCAGTTTGCTTATGATGGTCCATCCTCGGCGGACCACCTGGGCCGGATCCTATCGACCACGCTCGGACCGGTGGTTCATCCCGGTTCAACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCACAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAATCATCTTGCTAAGCTTCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTGCTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGGTAACTGTGGACGATGCCTCCGACGAGATCATCGGCGGCGGTGGCGGTGGCGGTGGCAATAAATTTGTAATAAAGGCGTCTCTTTGCTGTGAGGACCGTTCAGATCTTCTCCCTGACCTCATAAAAACGCTGAAATCGTTGCGTTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGTCGTGTAAGAAATGTCTTGTTTGTCACTGGTGAAGAAGACGAGGATTCAACAACCACTGATCATAATAATAATAGTAATAGTAATGATAATAATAATAATAATAATCCCAATTCCGACAACCAACACCAACAACAACTTAATATCAGCTCAATTCAAGAAGCACTGAAGGCTGTGATGGAAAAAACAGGAGGGGATGATTCATCTTCAGCAAATATTAAAAGACAAAGGACAAATAATAACATCAATATCCTTTAA 1146 44.42 MRGEDQEEEHRHHHQGECSQTIENMFQEQLLLHQQLQNNNNNNNTDHIIYGDHLHHGTGRGLIFPAEVVSPVLQPWPPLNPFLIPPPPPPPPPTSLCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRILSTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDEVTVDDASDEIIGGGGGGGGNKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEEDEDSTTTDHNNNSNSNDNNNNNNPNSDNQHQQQLNISSIQEALKAVMEKTGGDDSSSANIKRQRTNNNINIL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7777428 7780326 - Tan0015838.1 Tan04g0901 749305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0901 381 MobiDBLite consensus disorder prediction 361 381 - -
Tan04g0901 381 SMART finulus 174 223 IPR011598 GO:0046983(InterPro)
Tan04g0901 381 CDD bHLH_AtAIG1_like 163 240 - -
Tan04g0901 381 Gene3D - 163 224 IPR036638 GO:0046983(InterPro)
Tan04g0901 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 223 IPR036638 GO:0046983(InterPro)
Tan04g0901 381 FunFam transcription factor bHLH30 163 226 - -
Tan04g0901 381 MobiDBLite consensus disorder prediction 307 340 - -
Tan04g0901 381 MobiDBLite consensus disorder prediction 357 381 - -
Tan04g0901 381 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983(InterPro)
Tan04g0901 381 PANTHER TRANSCRIPTION FACTOR BHLH30 144 374 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan04g0901 381 MobiDBLite consensus disorder prediction 317 340 - -
Tan04g0901 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0901 Tan-Chr4:7777428 Tan10g1588 Tan-Chr10:26787737 1.10E-36 dispersed
Tan02g2483 Tan-Chr2:93417581 Tan04g0901 Tan-Chr4:7777428 1.30E-27 transposed
Tan03g1804 Tan-Chr3:73676387 Tan04g0901 Tan-Chr4:7777428 3.90E-16 transposed
Tan05g0726 Tan-Chr5:5184794 Tan04g0901 Tan-Chr4:7777428 1.20E-29 transposed
Tan11g1947 Tan-Chr11:31004043 Tan04g0901 Tan-Chr4:7777428 1.40E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27203 PF00010 HLH 1.90E-12 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0901 - - - 0.0