Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0923 ATGTACAACACTTATGCTAGCTCAAGTGTATATTCCATTCGTAGCAAAGGGCCTCTTTCCCATTGCTTTAATGAGCGACCCATCTTCTTAAATGAAAGATGTAATGGAAATCCATTGCATCTTTCATCATCATCATCATCATTATGTTGTTCTTGTTGTGTTTGTTATGCATTCCCAACCCACAGAGTGCCTGTTGGCCCTAGCATTTTCTATGGGCCGAGGCAATCCACCCTGCTTCAATGGTCGATTTCTAGGAGGTTGATGTTGGGTGGCCGAAATCGGTTCTGTTATACGCTTCCGGAATATGGGCGTGTTCTGGATTGTTATGAGGTTCCTTTTTCTGTTAGTGATGGTAGGACTTGTCATTGTAGTGAGGGAAGGAGATATAAAAGATGTTGCATGATTTCTGAGAGTGATTGTGAATATGACGAATCGGATGGATTTGATGAAGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGGGAGGGTTTTGGTGGTCAGGAAAAAAATAGGTCATCTAAGAGAGTGGAAGTGGGGAATCAAAGAAAATTCGGAGCCAGGGAGAGAAATCTAAGTTCATCTAGAAGAGTAGAACTAGAGAAAAAGGATAGAAGAGGTGTTGAGGAGAAAACGTTAAGTTCATTTGAAAAGATAAGAGTAGATAGAAAAAGAGAGAGCGACAGTAAGCGCGACAGAGACGAGAGGAAAAGCAATAAGTTTAGTTCTTTAAATAGTAAACAAAATAATAAAGTTGGATCAATTGCAGTTGAGTTGAGGAAAGATGGATATAGACTGAATGGAGATCAGTTAGTTCATTCAAGAGGTGATAGTCAGAGTTTAAGAAAAGAAGGGTCTACTTGTTCATCTTATTATTCACTTTCCTCATCTGGGGATATTGAGGACGATGCTGAAGTGGAAGACAAGAATGTGCAATTTGTGGAGGAATTGTCCAGTGGGTACAGATACGACTCCGTGAGTGATGTGGGAGAAAAATTAGATGGTCAGATCGAGGAAGAGTTCAAGAGACAAGGAGATGAGAAGGGTCGAGAAGAGGAATCGGTACAAGGTGATACTACAGTAGGGAATCGTGCTGATTGGCGTTTGAGGAAGAACTCAGAGAAGAAACTTAATGAAGGATCAACAAGAGTAACATCCTCCGCAAGTGAAACCTCTGAGATGAACTCAAGATTGTCTAGGACCAGGGAAAGTGGTTATGCAAGTACTTCAAGTTCCGAGAAGAAGTTTGTTGACAAGGAAGAGGAATTGAAAATGGCGGTGACTTTGAATGAGCAATCAAAACAATATGATGTATCAGGTAAGAAAGTGGGTGGTGTGTTTATAAAGGAAGGGAAAAATCTTGCTGAAGTATCAGAAATAAGCCGCAGTAATGCAGAAGGAATTTCTCGTTCTCATAAAAGACTTACCACTAAGAATGAAAACCTAGAATTAGATACAAATCTCATCAAGAAGGCAAGCAACAACAATCATGAAACTGTTCGTCCTGTCCTTCAAGAAAAAAGTTCAAGACGAAGTTCATCGTTTCAACAACTTTTGGGAGTTTCAGAAAATAGGAAAACTGAGAGAGAAAGGATCTCTCATCAGACAAGCCAGTCTGATGCAGTGATAAATGCAAGTGAAAGTACAGATGCCCATATAACTTCTAATCAAGAGGTTGAAGAAAGGCATCACCAAATAGGAAATCATGCCATTGGGGAAATGGATTCAAGACAAAAATTTCTTCATCTTGGTGTTTTATCAGTAATCAAAGAGGGTAATACAAACACCTCTGTTTCAAGTTCTGAAGTTCAAACACAAGATGAGGAACAAATTGGAACATCAGTCAATGCATCAAATCTTTTGGCTAAAGACAAAAAGTCTTCAACAGATCAAAAAGCTTCTCAGAGATTTATTTCCAGAAAAGGTTCCCGAGATGCCACTAACATTTCACTGGTTCATGGTACTGATAAAATATCTGCTACATATTCTGAAAAAACACTTGAAAATCGAATATTCAAGCAAGAAACTAATAAATCATTAGTGGAAAAAACTGTCAAGGAAACCATAATACGAAATGGTCAAAATAATGATCGCGTGGTGCAAACTGAATCAGGAAAAGAGGCTAAAAATCATGTAGAAAAATTAAAAGTTCAAGGATCCATTAATTTAAGTTCCCAAAGTAGTTATCAAGGGATTGGCGTGAATGAGGAAGGAAATAAAAGCTCACGGGCTGTGTTAATGCCCCCTCCATCTCAGCTTGTAGCTAGAAATCCATTGCGAATAGATTCTTCTAGTGAAATGGTGAGCCAAGTAGTTTCCAGAAGAACATCAGGAAGCAGTTCAGGTGCTTCCTACGTGCCATTGGGGGGAAGTCCAGCTTTGCACAGCAAGTCCTACAGAGAAAGTGGGGTAGACGAGAGTACTGGGGAGCCAACATACCTCATCACTCCTGATGATACTCTAGCTTCAGCTGACCGTTTAGAGAGATCGTCTGCACAGTTTGTTGGGGAGTTCATTGAGAAATCCAGGAGTGAACTGTTAATTTCTGAGATCAAGAAGGAAGAAAATATCTCTGAAGTAGAATTACTGCATGAAGAGAAGCATGGACAAAAGAATTCTGTAGATTATCAAATGAGGGACCATGACTCAAGGCTCTCATCACAGAGTTCTGGAACCAAGGGTCCTTCTGATGAAATGTGGCATGTAATAGACTCAACTACTGAGCAGCCTCCCAAAACTGATGATCCTGAGACTAGTGCACACAGTGAGCATGCAATTGTCAAGAGAAGTGGCAGATCCTTGTGGAACGTCATCTCAGACATAGTTCATCTCCGTTGGAGTTCACGTGGTGAAACCTCCGATTCAACTTTAAGATCAGGCGGAAGAAATTCACCAAACGAGTCTGTTAGTAATGAGACATGGTTTTCTGGCGGTGAACATGAGGAGACTGATAATACAAAAATTGGAAGAACCACAGTTTCTGAATTCACTTCATCGAATCGGTTGGAAGAACCAAATCCTTCTGCCCATGGCCAAGATTTATCTGATGATAGGAAAGCAAAAAATATATATTATGGGGTCGAAGAACCAAATCCTTCTGCCCATGGCCAAGATTTATCTGATGATAGGAAAGCAAAAAATATATATTATGGAGTAGATACCGCATCTCCCTCAAATATAATGGAGACCAAGCCATCAGGTGGGACTTTGTTAGTTTCTGGAGAAGTGATCTTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTCAGCTTCAGATCTAGAACAGTCATCGTTGCCACTGTCTCCCCAAGGTGTAAGAGGATCTCTCATTATTAAAGAAATTTCTCATAGTGGTAAAACTGATCCCTTTGCAAGCAGCTCTGCAGAGCAGTTGGGGCATTCTTCTGATGCAACGTTACCAGAGATATCAACAACTGGAACCAGGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTAAAAGATCGGTTTGATGAATGGGAAGAAGCATATTTACTTGAAACCGAGCAGCGAAAAATGGACGAAATGTTTATGAGGGAAGCGCTTGCTGAAGCCAGGAAGGCAGCTGATACTTGGGAGGTGCCTGTGGGAGCAGTATTGGTGAAACATGGAAAAATTATTGCTCGTGGCTGCAACCTGGTCGAAGAGTTACGAGATTCCACAGCCCATGCAGAAATGATTTGTATTCGGGAGGCTTCAAAGCAATTAAAGACATGGAGGCTTGCTGAGACAACTCTCTACGTGACACTTGAACCATGCCCTATGTGTGCTGGAGCGATACTACAGGCACGAATCGAAAATCTTGTGTGGGGAGCACCAAACAAGCTTCTTGGAGCTGATGGCAGTTGGATCAGACTTTTTCCTGATGGTGGGGAGGGAAATGTCTCAGAACAGTCTGAGAAGCCTGGTGCACCCGTCCATCCGTTCCACCCGAAAATGACAATTCGACGAGGTGTATTGGCATCAGAATGTGCAGATGTAATGCAACAATTCTTTCAGCTAAGGAGAAGGAAGAAGCAAAAGAAAGAAAACACTCCACCTCTTACCATTGCTCATCATCCCTCAAAATTTATTACAAAGATGCACAATATTTTCCACATACTGTTCTGTTTATAA 4155 41.01 MYNTYASSSVYSIRSKGPLSHCFNERPIFLNERCNGNPLHLSSSSSSLCCSCCVCYAFPTHRVPVGPSIFYGPRQSTLLQWSISRRLMLGGRNRFCYTLPEYGRVLDCYEVPFSVSDGRTCHCSEGRRYKRCCMISESDCEYDESDGFDEEDIAEAMISLIREGFGGQEKNRSSKRVEVGNQRKFGARERNLSSSRRVELEKKDRRGVEEKTLSSFEKIRVDRKRESDSKRDRDERKSNKFSSLNSKQNNKVGSIAVELRKDGYRLNGDQLVHSRGDSQSLRKEGSTCSSYYSLSSSGDIEDDAEVEDKNVQFVEELSSGYRYDSVSDVGEKLDGQIEEEFKRQGDEKGREEESVQGDTTVGNRADWRLRKNSEKKLNEGSTRVTSSASETSEMNSRLSRTRESGYASTSSSEKKFVDKEEELKMAVTLNEQSKQYDVSGKKVGGVFIKEGKNLAEVSEISRSNAEGISRSHKRLTTKNENLELDTNLIKKASNNNHETVRPVLQEKSSRRSSSFQQLLGVSENRKTERERISHQTSQSDAVINASESTDAHITSNQEVEERHHQIGNHAIGEMDSRQKFLHLGVLSVIKEGNTNTSVSSSEVQTQDEEQIGTSVNASNLLAKDKKSSTDQKASQRFISRKGSRDATNISLVHGTDKISATYSEKTLENRIFKQETNKSLVEKTVKETIIRNGQNNDRVVQTESGKEAKNHVEKLKVQGSINLSSQSSYQGIGVNEEGNKSSRAVLMPPPSQLVARNPLRIDSSSEMVSQVVSRRTSGSSSGASYVPLGGSPALHSKSYRESGVDESTGEPTYLITPDDTLASADRLERSSAQFVGEFIEKSRSELLISEIKKEENISEVELLHEEKHGQKNSVDYQMRDHDSRLSSQSSGTKGPSDEMWHVIDSTTEQPPKTDDPETSAHSEHAIVKRSGRSLWNVISDIVHLRWSSRGETSDSTLRSGGRNSPNESVSNETWFSGGEHEETDNTKIGRTTVSEFTSSNRLEEPNPSAHGQDLSDDRKAKNIYYGVEEPNPSAHGQDLSDDRKAKNIYYGVDTASPSNIMETKPSGGTLLVSGEVILTDGRKVDVISSGSASDLEQSSLPLSPQGVRGSLIIKEISHSGKTDPFASSSAEQLGHSSDATLPEISTTGTRDGEVKQRKLQRNKQVLKDRFDEWEEAYLLETEQRKMDEMFMREALAEARKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIRLFPDGGEGNVSEQSEKPGAPVHPFHPKMTIRRGVLASECADVMQQFFQLRRRKKQKKENTPPLTIAHHPSKFITKMHNIFHILFCL 1384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8006234 8010952 - Tan0009024.1 Tan04g0923 749327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0923 1384 MobiDBLite consensus disorder prediction 327 357 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 989 1006 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 1122 1149 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 949 976 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 281 297 - -
Tan04g0923 1384 Gene3D Cytidine Deaminase, domain 2 1175 1361 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 379 412 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 864 899 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 594 624 - -
Tan04g0923 1384 SUPERFAMILY Cytidine deaminase-like 1169 1351 IPR016193 GO:0003824(InterPro)
Tan04g0923 1384 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1185 1307 IPR002125 -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 169 204 - -
Tan04g0923 1384 FunFam tRNA-specific adenosine deaminase 1180 1360 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 1122 1156 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 495 522 - -
Tan04g0923 1384 Coils Coil 1156 1176 - -
Tan04g0923 1384 Pfam MafB19-like deaminase 1188 1298 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Tan04g0923 1384 MobiDBLite consensus disorder prediction 495 541 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 221 247 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 325 416 - -
Tan04g0923 1384 CDD nucleoside_deaminase 1191 1298 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 364 378 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 864 882 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 269 305 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 949 1017 - -
Tan04g0923 1384 MobiDBLite consensus disorder prediction 594 641 - -
Tan04g0923 1384 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1165 1354 - GO:0009507(PANTHER)
Tan04g0923 1384 MobiDBLite consensus disorder prediction 794 816 - -
Tan04g0923 1384 Hamap tRNA-specific adenosine deaminase [tadA]. 1191 1349 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Tan04g0923 1384 MobiDBLite consensus disorder prediction 221 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0923 K11991 - - csv:101215576 2092.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0923 Tan-Chr4:8006234 Tan09g1731 Tan-Chr9:68841740 8.50E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32