Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0932 ATGATTCAAATGGGAATTAGAACAGAACTTTCCACTTTATTCTTCTTCTTCTTCTTCTTGTTTTGCTCATGGAATTCTTCTGTAAATGCCTTGCTTACTGCAAAAGGTGTCAACTATGAAGTGCAAGCCCTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGCTGGAGCATGATCACTTGTTCTCCAGAGAAATTTGTAATTAGTTTAGGAGCTCCCAGTCAGAACTTGTCGGGTAGCCTGTCGCCGAGCATCGGAAATTTGACCAATCTTCAGTCTGTGCTTCTACAGGACAATAATATATCAGGAACAATCCCAATGGAGCTTGGCAACATACCAATGCTCGAAACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCATTTCTCTTCCCCATCTTAAGAGTTTGCAATATCTGAGGTTAAATAACAATAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAATATGACTCAACTAGCATTGCTGGACCTGTCTTTTAATAATCTGAGTGGCCCATTGCCCAGATTGTTGGCAAAAACCTACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCCGAGCATAGCTGCAATGGAACTGCTCCACCACTCTTATTTGCAGTCAATACGCCTCAAAATCCTCAGCCTTCTGGCAGATCCAAGGGCCACAAATTAGCCTTGGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGCTAACTATTGGGTTTGGCTTTTTTATTTGGTGGAGGCAACGACGCAACCAGCAGATTTTCTTCGATGTTAACGACCAACGATTTGAGGAAGTTTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTTCAAGCTGCCACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGTTTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAAAGGCTAAAAGATGGAAATGCAATGAGAGGAGAAGTCCAATTTCATACTGAAGTTGAAATGATCAGCCTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGCATGGCAACCACAGAGAGACTGTTGGTTTACCCCTACATGTCCAACGGCAGCGTCGCATCCCGCCTCAAAGCGAAGCCAGCTCTGGATTGGAGCACAAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGCTTACTGTATTTGCACGAGCAGTGTGATCCTAAGATCATACACAGAGACGTCAAGGCTGCAAATATTTTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGGTTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCAGAATATCTCTCCACTGGCCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTGGAAATACTAGTTGACAAGGATCTCAGGAATAATTACGACCGGATCGAGCTTGAAGAAATGGTTCAAGTAGCTCTTTTGTGCACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTCGCAGAGAAATGGGAAGCTTCTCAGAGGGCAGAGGCAAACAGGTATAGAGTCAATGAATTCTCCTCTTCCGAGCGATATTCTGATCTTACAGACGACTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1887 44.36 MIQMGIRTELSTLFFFFFFLFCSWNSSVNALLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSPEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPMLETLDLSSNGFHGEIPISLPHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQNPQPSGRSKGHKLALAFGSSLGCVFLLTIGFGFFIWWRQRRNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEVQFHTEVEMISLAVHRNLLRLYGFCMATTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRAEANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8204132 8207110 + Tan0006230.1 Tan04g0932 749336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0932 628 Gene3D Transferase(Phosphotransferase) domain 1 385 597 - -
Tan04g0932 628 Pfam Protein tyrosine and serine/threonine kinase 311 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0932 628 SUPERFAMILY L domain-like 40 201 - -
Tan04g0932 628 FunFam Somatic embryogenesis receptor-like kinase 1 385 597 - -
Tan04g0932 628 Gene3D Ribonuclease Inhibitor 37 218 IPR032675 -
Tan04g0932 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g0932 628 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524(InterPro)
Tan04g0932 628 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 628 - -
Tan04g0932 628 ProSiteProfiles Protein kinase domain profile. 308 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0932 628 Gene3D Phosphorylase Kinase; domain 1 277 384 - -
Tan04g0932 628 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Tan04g0932 628 FunFam Somatic embryogenesis receptor kinase 1 277 384 - -
Tan04g0932 628 Pfam Leucine Rich Repeat 177 196 IPR001611 GO:0005515(InterPro)
Tan04g0932 628 Pfam Leucine Rich Repeat 104 125 IPR001611 GO:0005515(InterPro)
Tan04g0932 628 Pfam Leucine Rich Repeat 129 150 IPR001611 GO:0005515(InterPro)
Tan04g0932 628 Pfam Leucine Rich Repeat 152 174 IPR001611 GO:0005515(InterPro)
Tan04g0932 628 SUPERFAMILY Protein kinase-like (PK-like) 287 578 IPR011009 -
Tan04g0932 628 FunFam Putative LRR receptor-like serine/threonine-protein kinase 37 218 - -
Tan04g0932 628 SMART serkin_6 308 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2091 Tan-Chr2:90498898 Tan04g0932 Tan-Chr4:8204132 2.90E-196 dispersed
Tan04g0932 Tan-Chr4:8204132 Tan11g1616 Tan-Chr11:15754951 1.50E-237 dispersed
Tan04g0926 Tan-Chr4:8051596 Tan04g0932 Tan-Chr4:8204132 1.60E-69 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67442 PF00069 Pkinase 1.40E-43 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0932 - - - 0.0