Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0939 ATGAAAAGAAGAGGGCATTGTAGAATTGTGCAGTTGGCATTGGCAAAAATGGAAAGAAGAAAAGCTCTTGAAGACAAACGTGGGAATATTAAAGATGCATACATGAAAGTACTTTCTGTAGCTGGCGGAAGTTTCAGGACTGGCATCATGGAAATGGAATCTGCACTCTCCCATCAATTCTGCATTAGGCTTTCACCAAGTGTTGCTGTTGCATGTAATATGTTGGATCATATCAACGAAACTTGTCACTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCGTCACTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCTATTGCTGCTGCAAGTCATCCACAGATAACATGTATTGCATGCTTTGACGAACGCTCTCTTGCTTTTCATGCGATTGGGTATGCAAAAGGATCTCATAGCCCAGCAGTTGTAATCACATCATCAGGCACCGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGCCAATATTTTCTTCCTCTTTTATTACTCACAGCTGACCGCCCCCCGGAGCTACAGGATGCAGGAGCAAATCAAGCTATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAGTCTTCCTGCCCCAGATGATCGAATTCCCGCCAGAATGGTACTTACCACTCTTGATTCTGCTGTACATTGGGCAACCTCTTCACCCTGTGGCCCCGTCCACATAAATTGTCCATTTAGAGAACCACTGGAAAATAGTCCTAGTCCATGGAATTCGAGTTGCTTAAATGGATTGCACATTTGGTTATCAAGCACTGAAGCTTTTACCAAGTATATTCGACTCGAAGCTTCTCCAATGTCTATTGATACTTTTGGCCATATGGCAGAGGTTTTGAAAATAATCCATGGAGCCAGAAATGGAATTCTACTTCTTGGATCAATTCACTCAGAGGATGAGATATGGGCTGCATTTCTATTGGCCAAACATATTTCATGGCCTATAGTAGCTGATGTGTTGTCTGGTTTACGATTGAGAAAGAGTTTGTCTTCCTTCCTAGAAATGGAAAAGAACTTTTTCTTTGTCGATTACCTTGATCATGCATTGCTTTCTGATTCGGTGAGAAAATGGCTAAAATTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGATTGAGGACTGCACTCCTTGTTCATACATCATGGTTGATGAGCATTCAGGTCGTCATGATCCATCACATATTGTGACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTGGGTTGTTTACTTAAAGCTGGTTTTCCTCGCAATAGGAGCAAGGGGACTGCTACTTTACAAGCATTGAATATGATGATTGAGTGGGAGATACAGTTTCAAATTTCTGCTAACTACTCTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAGACACTTCCATTTGATTCTGTTCTGTTCTTGGGGAACAGCATGCCAATCCGTGATGTAGACATGTATGCATATGGTTGGTCAAAATGCAACGACAGTGTACCAACTAGACCATTAAACTTACAACTGCCATTTTGCTGGACATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTCCTTAGCACAGCTATTGGTTTTTCTGTTGGCTGCAACAAACGAGTGCTTTGTGTAGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTGGCAATTTTGAACCAGAGGACAACGAGGAAACCTGTGACTATAGTTGTGATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGAGCCAGCAATACTAGACCAGTACTTCCACACCTCTCACAAGATTTCACTCCGTAGTCTATGTGTGGCACACGGCCTGAAGCACTTACATGTACGGACGAAGATGGAACTTCAAGATGCTTTATTTATGTCTCAACGTGAAGAAAATGACTGCATAATCGAGGTTGAAAGTTCCATTGATGCCAATACTACCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGCAGATCATGGTTTACGCATCTTTTCAAGGCTTTATTTTGAAGAATCTGTTTCACCTGGACTCTTCCTTTGCAAGATAAGTAGAATGGACTACACATTGTTCAGAATCCCACTACGTGCTCCACCTACAACTACATCTAGTTTTATTGACCAAGTCGGTCAGAAGCTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTCGAGGATGGGAGTCTTGGGCTTGGTGAGGTTTCGCCCCTTGATATCCACAAAGAGAACCTACAAGATGTGGAAGAGCAACTTAAATGTCTTCTTCATATATTAAAGGGAGCCAAGATCAGCAGCTCCATTCCTCTACTACGGGGCTCATTTTCGTCTTGGATTTCCCATGAACTGGGAATACCACCGAATTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCTGTCCTCAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTAAATGTGCTCCAGCATCAGTTAGATGAAGAAAACAACTTGACGTCTTCATCAAAAGTTCAAATTTGTGCGCTGTTGGATTCTGGTGGAACTCCTTCTGAGGTTGCTCATGATGCTAAGACACTGGTTGAAGAAGGGTTTACTGCTATCAAGTTAAAGGTAGCCCGACAAGGGAATGTCAAGTATGATGCTGCAGCCGTACAGGAAGTAAGGAAGAAGCTTGGCAACCAGATTGAACTCCGTGTTGATGCCAATCGCAACTGGAGCTATGAAGAAGCTATTCTATTTAGTTCTTTGGTGGAGGACTGTGGCCTGCAATATATTGAGGAACCAGTTATGGATGAAGCTGCTATTGTTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTGTTGATCGTATTCAAGATAATCTTGTGAAAGAACTTGCGAAGTATGTTCATCCAGGAATTGTTGCTATAGTTATAAAACCCAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCAAAGTGGGCACAACAACATGGAAAAATGGCTGTTGTCAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGCTATATACAGTTATCCCGTTATCTGGAGCTTCAGAATGCAGAACTAAGAAAAGTGATGAATACTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTGGCTGTTAATCCTCTCAGAATTTGTCGTGACCCTCATAGTGGCATTATAGAAGCATCTGTCGCTGAGGCTAATCGACTTCTAAAAAGCTTTCAAATCAACCAGAAGTTTGTTTGTAGAAAATTTACTGAAGAGCAAGTTCGTAGGTACCAATTGACTGTAGACTTAAAGGGATTCTCTTATTTAGTAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTCTTATTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTACAATTATGAAAGCGATCTCAGGTTCAGCCAGATGCATTTCTCTTGACCTTCCTGGGCATGGGGGATCAGCCACACAAAAGAATGATTGTGACGTTCATGATGTGGAGGAACCAAGTTTTTCTATGGAGGTTGTTGCTAATCTACTGTATAGGTTGATTCATCGTCTTGCTCCTGGTAAAGTTAACCTTGTAGGGTATTCAATGGGAGCTAGGATTGCCATGTACATGGCCCTGAGATTTGATGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCTGGATTAAAAGACAAGACGGCAAGAAGAATCCGTAGAGTTAAAGATGATTCTAGAGCAAAAATCCTTAAGGTCTATGGTTTACAAAGCTTTCTTGAGGCATGGTATTGTGGGGAACTATGGAAAAGTTTAAGGGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCACGATGATGTGCAGCATCTTGCAAAAGCTTTGTCTGATTTAAGCATTGGAAGGCAGCCGTAA 4071 41.81 MKRRGHCRIVQLALAKMERRKALEDKRGNIKDAYMKVLSVAGGSFRTGIMEMESALSHQFCIRLSPSVAVACNMLDHINETCHSEQEHANINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPQITCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQYFLPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFSLPAPDDRIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNSSCLNGLHIWLSSTEAFTKYIRLEASPMSIDTFGHMAEVLKIIHGARNGILLLGSIHSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSSFLEMEKNFFFVDYLDHALLSDSVRKWLKFDVIIQIGSRVTSKRVSKMIEDCTPCSYIMVDEHSGRHDPSHIVTHRIQSTVLEFVGCLLKAGFPRNRSKGTATLQALNMMIEWEIQFQISANYSLSEPQVAQVISETLPFDSVLFLGNSMPIRDVDMYAYGWSKCNDSVPTRPLNLQLPFCWTWTSGNRGASGIDGLLSTAIGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRTTRKPVTIVVINNNGGAIFSLLPIKDKVEPAILDQYFHTSHKISLRSLCVAHGLKHLHVRTKMELQDALFMSQREENDCIIEVESSIDANTTFHSVLRKFTCQAADHGLRIFSRLYFEESVSPGLFLCKISRMDYTLFRIPLRAPPTTTSSFIDQVGQKLFREGFILSLFLEDGSLGLGEVSPLDIHKENLQDVEEQLKCLLHILKGAKISSSIPLLRGSFSSWISHELGIPPNSIYPSVRCGLEMAVLNAIAGRKGCSLLNVLQHQLDEENNLTSSSKVQICALLDSGGTPSEVAHDAKTLVEEGFTAIKLKVARQGNVKYDAAAVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVEDCGLQYIEEPVMDEAAIVKFCEESGLPVALDETVDRIQDNLVKELAKYVHPGIVAIVIKPSVIGGFENAALVAKWAQQHGKMAVVSAAFESGVGLSGYIQLSRYLELQNAELRKVMNTQPAPSIAHGLGTYRWLEEDVAVNPLRICRDPHSGIIEASVAEANRLLKSFQINQKFVCRKFTEEQVRRYQLTVDLKGFSYLVKVLEVGQRTNDNVLLFLHGFLGTGEDWITIMKAISGSARCISLDLPGHGGSATQKNDCDVHDVEEPSFSMEVVANLLYRLIHRLAPGKVNLVGYSMGARIAMYMALRFDDKIGRAVIISGSPGLKDKTARRIRRVKDDSRAKILKVYGLQSFLEAWYCGELWKSLREHPHYSQIIASRLKHDDVQHLAKALSDLSIGRQP 1356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8282585 8297131 + Tan0019477.1 Tan04g0939 749343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0939 1356 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 97 208 IPR012001 GO:0030976(InterPro)
Tan04g0939 1356 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 88 268 IPR029061 -
Tan04g0939 1356 SUPERFAMILY DHS-like NAD/FAD-binding domain 251 466 IPR029035 -
Tan04g0939 1356 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 559 667 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Tan04g0939 1356 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 485 678 IPR029061 -
Tan04g0939 1356 Coils Coil 779 799 - -
Tan04g0939 1356 Gene3D - 87 284 - -
Tan04g0939 1356 SMART MR_MLE_2 887 983 IPR013342 -
Tan04g0939 1356 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 28 1356 - -
Tan04g0939 1356 Pfam Middle domain of thiamine pyrophosphate 274 507 IPR032264 -
Tan04g0939 1356 Pfam alpha/beta hydrolase fold 1168 1279 IPR000073 -
Tan04g0939 1356 Pfam Enolase C-terminal domain-like 890 1068 IPR029065 -
Tan04g0939 1356 Gene3D - 485 695 - -
Tan04g0939 1356 NCBIfam o-succinylbenzoate synthase 756 1066 - -
Tan04g0939 1356 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 935 966 IPR018110 GO:0009063(InterPro)
Tan04g0939 1356 SUPERFAMILY Enolase C-terminal domain-like 883 1102 IPR036849 -
Tan04g0939 1356 SUPERFAMILY alpha/beta-Hydrolases 1144 1318 IPR029058 -
Tan04g0939 1356 SUPERFAMILY Enolase N-terminal domain-like 727 848 IPR029017 -
Tan04g0939 1356 Gene3D - 724 863 IPR029017 -
Tan04g0939 1356 CDD TPP_PYR_MenD 97 258 - -
Tan04g0939 1356 SFLD o-succinylbenzoate synthase 725 1102 - -
Tan04g0939 1356 NCBIfam 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 95 566 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Tan04g0939 1356 Gene3D alpha/beta hydrolase 1160 1356 IPR029058 -
Tan04g0939 1356 Gene3D - 303 477 - -
Tan04g0939 1356 SFLD muconate cycloisomerase 725 1102 - -
Tan04g0939 1356 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 89 696 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Tan04g0939 1356 Gene3D - 864 1107 IPR036849 -
Tan04g0939 1356 CDD TPP_SHCHC_synthase 486 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0939 K14759 - - csv:101217012 2336.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1018 . . . . . . . . Cmo04g01637 . . . . . Sed06g1824 . . Bhi07g01422 Tan04g0939 Cmetu10g0984 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37