Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0943 ATGGATATTGGTGACAGAGATAAGTTTAGACTGGAAAGTAGCTCAGAGGATTGTATTAACTATTCACATAGCATGTCTTCGGATTGGCGATTTGGCGAGACGGTGTTCACGAGTATGCCGATTGGATTGGTTTTGCCAGGAAATGTGGATGTAGTTAGGAATCAGGATATGGTTGGTTGTTCTTCTTCTACTGCTCCTGTGGTAGAGGGATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAGCATTCAAGACCATAACAATTGTAGTACTTCAAACACCATAGCAAATAACAAGGCCAGTGCCTGTCCAGTGTCTTTGAGCAGTGACATTGACAGAACACTTGACATCAGCTGGAACCTATCACATACTATCAACAAAGGGGGAGTTTACCTGCCTAATATTCCTGGTGTGCTCCCACCGAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAGCGTGCAGCCAGGCTCTCCTGCTTTAGTGGTGGTAATTTTAGTGATATTGTTGGCCATTTCAACATTCCTGAGCCTATGGGTGTTTTTCCTAGAGGCATGGGAGTAATACCTGAGAGACAGGATGATATTCCTCGAAATGGGTTAGGTTTGGTATCGGGAACCGGAGGACAATCCCAAAGGAACACGGTTAGCAGTGAAGCTTCCAAGCCTGTTTCTTTGACTAATGAACATGGAGCTACTGAAGGGGGTTCACCTAAAAATGGAAGCCCTTTGAAATTGGATGATCGTGGTAAACATGCGGTTGATGGTTTGGCTAATGAATCCGATGAAGCTGAGTTTAGCGGTGGTGATGGTTCGGGTGAGCCATGTACGTTAGAGGTTGCAGGTAAGGAACTTTCTGCTAAGGGACTAGGTGCAAGGAAAAGGAAAAGGAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAACTAGTGTTTCGGCTAAGGATAATACTGAAACTCAGCAAAAGGGAGATCAAAATCCGAGTTCAACCGCAAACAAGAGTACAGGAAAACATGGTAAACAGGCGTCTCAACCTTTAGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGGGGCCAAGCGACAAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAGATCAGCGAGAGGATGAAATTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGGAAAGCAGTGATGCTAGATGAAATTATTAACTATGTCCAATCACTGCAACGACAAGTTGAGTTTTTATCGATGAAACTCGCTACTGTCAATCCAAGGTTGGATGTTAACATTGATGGGCTCCTAGCCAAAGATATTCTTCAATCACGAGCTGGTCCATCGTCGACATTGGGATTTTCCTCACATATGCCCGTTGCTTGTCCGCCACCACATATTGCTCATCATGGACTTATCCCAGGCAGTTTTCCTGCCATAGGGTGCTCTGAGATGTTAAGAAACACAATAAGCTCTCAGATAACTCCAAGGTCTGGTGCATTTAAGGAGCCTACTCAGATAAAGAATGTATGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCCTAATTCTTTAGAAGTTGAAGGGTCTGATTCACCAGGCAATACAAAAGTTGAACATTGA 1686 44.07 MDIGDRDKFRLESSSEDCINYSHSMSSDWRFGETVFTSMPIGLVLPGNVDVVRNQDMVGCSSSTAPVVEGFSSTIWEQAANCQNLGICSIQDHNNCSTSNTIANNKASACPVSLSSDIDRTLDISWNLSHTINKGGVYLPNIPGVLPPSLSQLPADSSFIERAARLSCFSGGNFSDIVGHFNIPEPMGVFPRGMGVIPERQDDIPRNGLGLVSGTGGQSQRNTVSSEASKPVSLTNEHGATEGGSPKNGSPLKLDDRGKHAVDGLANESDEAEFSGGDGSGEPCTLEVAGKELSAKGLGARKRKRSGQKTELDQANGPLQQTSVSAKDNTETQQKGDQNPSSTANKSTGKHGKQASQPLDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDVNIDGLLAKDILQSRAGPSSTLGFSSHMPVACPPPHIAHHGLIPGSFPAIGCSEMLRNTISSQITPRSGAFKEPTQIKNVWDGELQNIVQMSFGMSTTPNSLEVEGSDSPGNTKVEH 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8332786 8337450 + Tan0007596.3 Tan04g0943 749347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0943 561 MobiDBLite consensus disorder prediction 295 362 - -
Tan04g0943 561 MobiDBLite consensus disorder prediction 212 243 - -
Tan04g0943 561 MobiDBLite consensus disorder prediction 541 561 - -
Tan04g0943 561 MobiDBLite consensus disorder prediction 296 310 - -
Tan04g0943 561 MobiDBLite consensus disorder prediction 311 354 - -
Tan04g0943 561 Pfam Helix-loop-helix DNA-binding domain 378 426 IPR011598 GO:0046983(InterPro)
Tan04g0943 561 CDD bHLH_AtBPE_like 365 450 - -
Tan04g0943 561 Gene3D - 372 446 IPR036638 GO:0046983(InterPro)
Tan04g0943 561 FunFam Basic helix-loop-helix transcription factor 372 444 - -
Tan04g0943 561 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 443 IPR036638 GO:0046983(InterPro)
Tan04g0943 561 SMART finulus 381 431 IPR011598 GO:0046983(InterPro)
Tan04g0943 561 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 150 496 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan04g0943 561 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 425 IPR011598 GO:0046983(InterPro)
Tan04g0943 561 MobiDBLite consensus disorder prediction 198 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0941 Tan-Chr4:8332786 Tan04g0943 Tan-Chr4:8332786 0.00E+00 dispersed
Tan04g0943 Tan-Chr4:8332786 Tan04g0945 Tan-Chr4:8332786 6.80E-298 dispersed
Tan04g0942 Tan-Chr4:8332786 Tan04g0943 Tan-Chr4:8332786 6.40E-298 tandem
Tan04g0943 Tan-Chr4:8332786 Tan04g0944 Tan-Chr4:8332786 6.80E-298 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27209 PF00010 HLH 6.30E-06 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0943 - - - 0.0