Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0950 ATGTCGAGTGCAATGAAGACAGAGCGATTAATGTCTATGGCAGAACTTATCTTAGCTTCCATTTCAGAAATCATAGATTCCACTGCGTGCACTGAAGAACAACATGGAAGATTTATTGAGATTGGAAGTTACTTTTATCGAGCATCTCTGGCCATTATGGAGCTACAAGCAATAGACCCGATAAATTTCGATGAAATCCTCCAATCTCTGAACAAAAGCATCAATCTTGCAAAGGATCTTCTGGAGAAGTTCCTAACAGGCATTCAACAAGTCTCAGATCCTGATCCCATTGGCATCATAGATCCACTAGAAGAGCTGATAAAACAGATGGGCGAACACTTGAACAAGATAGCAACCTATACTTTTGAGGATCAGAATTATGTGAAAATGGCGATTCTATCACTTTCAGATGAGATGCAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATAATGAACAAGCAAGAGATACAAACTTCTTCTTTGGAGGAACAACCAGAAAAAGAACCAGAAGAAATAGAAAAAGATCTATACCCCATTGACATGGACTGGGACACAAACAATACACAATCCCCAGTTGCACCGGAGTTGAGTGAAGCTGTTACAAATACAAACGGACGAAGCCAAAGGAAGTATAGAAATGTTACAGCAGCCTTGACAAAACTACCCTCAACGGCCAACTACATAGAACCACTCTTTGAGACCTTCATCTGTCCATTGACAAAAGATATCATGGATGATCCAGTTAGCCTAGAAACGGGAGTGACATATGAAAGACAAGCCATTGTTGAGTGGTTTGAAGAGTTTGAAGAATCTGAGGAAATTTTCTGCCCAGTCACGGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAACAGAGCTCTGAAGTCCACAATAGACAAATGGAAGGAACGCAATGAGATAGCAACAATCAAAGTTGCCCGGGCCGCTCTGTCTTTAGCCAGTTCAGATGAAATGGTGCTTGAGGCAATCAAAGACCTGTCGAACATCTGCAAAGGGAAGCAGTTCAACATAGAACGGATCTCAAATTTTGACATGTTACCTTTGCTTGTTAAGTTGCTGGAGTACAGAGACAAAGATGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAACCAATGAAGACAACAAGAAGATGATCTGTAACCAATTGGACATGTCAAGAATGGTCAATCTACTATCAAGTGGTCACAGGTCCATCCGGAATACATCTTTGCTTCTGTTGCATGAGCTTTCAAGATCCCAGTCATTGTCTGATCAAATTGGTTCAGTAACTGGGGGGATTTCAATGCTGATCATTATGAAGGATGATAGGTCGGATGAATTTGCTTCAGAAAAGGCAGATGCAACCTTGAGAAACTTAGAGACATCTCCAACTAATATCAAGCTTATGGCAGAATATGGACTCATGGAACCCCTCTTAAGGCATCTTACTGAAGGAAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGCAGATTGTTATTAGACATGATTGTATGGCAATTGTAGCTGAGAGGGCATCTCCAGCTGTTGTTAAGATGGTGCACGAAGGAGATACACTTGTCCGAAAGGCAGCATTTAAAGCTCTATTGCAAATTTCATCTTACAGGCCCAATGGTGAAATACTAGCAAAAGCTGGAACTGTACAAGTCATGGCTGAAGAGATGTTCACTCGTACCATCTGTGATGAACTTAATGATCCAAAAACAGAAGCAGCTGAAATACTGGCAAATATATGCGAGTCCAATCTTGATCTTGAGACACTTCAAGTTAATGCTCATGGCTCCACTATGAGTTCAGATTATGTAGTCTACAACATTATTGACTTGCTCAAGAACTCAACCCCAGATGAATTTAGCACGAGCCTCATCAGAATACTATTATGCTTGATAAACTCTCCAAAGCCAATGGACACCATTGTTTCAGGTGTAAAAAACACTGAAGCATGTGATACCCTCATAGAGTTCATCAATAGCCCATATGAAGAACTTGGAATTGCGGCAATAAAGCTGCTTATATTACTGTCCCCTTACGTGGGATTCACAATGGCAGAAAGACTCTGCAAAACCAGTGACCAAGTGGAGAACCTTATCAGTAGCATTACCTGGACAAACCAAGTCACAGAAAAGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACCAGAGCCTGACTCTTAACACCGTTCTCGTAAACAAGAACATCGTGCCCAAGATCCTGCAAACAATCAATCAAATACAGAGCAGTGGAACAGGAATGAGCAGGTATACAAATGCTTTGCTAGAGGGCTCGGTGGGCATTCTTGTCAGATTCACAGCAACACTTCATGAGCCGCAAATGTTGTCTCTAGCAAAATTTCACGATTTTACATCAGTATTTGCTAAGCTGCTTGCGCAAACATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGGGAAACTATCATCAGCATCTGTGAGTCTATCTAAGCCCCTGGACACTAAAAGAAAAAAGGTCATAAAATTTCTCCACTTACCCAAGCTTCTATCGCTAGGTTCATCAAAGAAGGGTCACTTAAGAGTATGCCCAGTTCACAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAGGCAATTGAAAGGCTATTAACCTGTTTAGACAATGAGAACAAAGAGGTAGTTGAGGCAGCTCTGTCAGCCATTTGTACGCTTGTGGATGACAAAGTGGATCTGGACAGAAGTGTGAGCCTGCTAAACGAATTTGACACAATAAGGCATGTTCTGAATGTGGTGAGAATGCACAAGCAAGAATCTCTATGGCATAAATCATTCTGGTTGATCGAGAAGTTCTTGCTCAAAGGTGGGGAAGAGTCTCTTTCAAATATATCACAGGACAGATCATTGCCGGCAATATTGGCTACTGCTTCCCATGAGGGGAACAACGAAACGAGGCAGATAGCTGAGAAGATATTGAACCATTTGAATATGGGAGGAGAGATTGGTATAAAGAGTAGGAGTAGAGATACATGCATGAAACTTCAGAAAAGAAACATGAACAAAATTTGA 3108 41.31 MSSAMKTERLMSMAELILASISEIIDSTACTEEQHGRFIEIGSYFYRASLAIMELQAIDPINFDEILQSLNKSINLAKDLLEKFLTGIQQVSDPDPIGIIDPLEELIKQMGEHLNKIATYTFEDQNYVKMAILSLSDEMQNISTKIVQAQAIMNKQEIQTSSLEEQPEKEPEEIEKDLYPIDMDWDTNNTQSPVAPELSEAVTNTNGRSQRKYRNVTAALTKLPSTANYIEPLFETFICPLTKDIMDDPVSLETGVTYERQAIVEWFEEFEESEEIFCPVTGQKLVSKAFNSNRALKSTIDKWKERNEIATIKVARAALSLASSDEMVLEAIKDLSNICKGKQFNIERISNFDMLPLLVKLLEYRDKDVRYAVLELLHQMAETNEDNKKMICNQLDMSRMVNLLSSGHRSIRNTSLLLLHELSRSQSLSDQIGSVTGGISMLIIMKDDRSDEFASEKADATLRNLETSPTNIKLMAEYGLMEPLLRHLTEGSEWMRIEMASYLGQIVIRHDCMAIVAERASPAVVKMVHEGDTLVRKAAFKALLQISSYRPNGEILAKAGTVQVMAEEMFTRTICDELNDPKTEAAEILANICESNLDLETLQVNAHGSTMSSDYVVYNIIDLLKNSTPDEFSTSLIRILLCLINSPKPMDTIVSGVKNTEACDTLIEFINSPYEELGIAAIKLLILLSPYVGFTMAERLCKTSDQVENLISSITWTNQVTEKQALSATFLAKLPHQSLTLNTVLVNKNIVPKILQTINQIQSSGTGMSRYTNALLEGSVGILVRFTATLHEPQMLSLAKFHDFTSVFAKLLAQTSSDEVQKLSAIGLGKLSSASVSLSKPLDTKRKKVIKFLHLPKLLSLGSSKKGHLRVCPVHKGACSSQNTFCLVHAKAIERLLTCLDNENKEVVEAALSAICTLVDDKVDLDRSVSLLNEFDTIRHVLNVVRMHKQESLWHKSFWLIEKFLLKGGEESLSNISQDRSLPAILATASHEGNNETRQIAEKILNHLNMGGEIGIKSRSRDTCMKLQKRNMNKI 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8352775 8359209 - Tan0015437.1 Tan04g0950 749354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0950 1035 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1010 IPR052608 -
Tan04g0950 1035 SMART arm_5 468 508 IPR000225 GO:0005515(InterPro)
Tan04g0950 1035 SMART arm_5 880 920 IPR000225 GO:0005515(InterPro)
Tan04g0950 1035 SMART arm_5 342 382 IPR000225 GO:0005515(InterPro)
Tan04g0950 1035 SMART arm_5 384 424 IPR000225 GO:0005515(InterPro)
Tan04g0950 1035 ProSiteProfiles HEAT repeat profile. 354 388 IPR021133 -
Tan04g0950 1035 SUPERFAMILY ARM repeat 317 598 IPR016024 -
Tan04g0950 1035 Coils Coil 146 166 - -
Tan04g0950 1035 Pfam Armadillo/beta-catenin-like repeat 880 918 IPR000225 GO:0005515(InterPro)
Tan04g0950 1035 SUPERFAMILY ARM repeat 482 1008 IPR016024 -
Tan04g0950 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 316 IPR013083 -
Tan04g0950 1035 Gene3D - 317 510 IPR011989 -
Tan04g0950 1035 SUPERFAMILY RING/U-box 223 312 - -
Tan04g0950 1035 Gene3D - 511 689 IPR011989 -
Tan04g0950 1035 SMART Ubox_2 236 303 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0950 1035 Gene3D - 784 1024 IPR011989 -
Tan04g0950 1035 ProSiteProfiles U-box domain profile. 232 310 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan04g0950 1035 Pfam U-box domain 235 308 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0950 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2750 Tan-Chr1:49743608 Tan04g0950 Tan-Chr4:8352775 2.00E-100 dispersed
Tan01g2751 Tan-Chr1:49743608 Tan04g0950 Tan-Chr4:8352775 3.60E-68 dispersed
Tan04g0562 Tan-Chr4:4749731 Tan04g0950 Tan-Chr4:8352775 6.00E-32 dispersed
Tan04g0950 Tan-Chr4:8352775 Tan11g0293 Tan-Chr11:2314913 1.20E-16 dispersed
Tan04g0950 Tan-Chr4:8352775 Tan04g1218 Tan-Chr4:11512502 5.90E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29