Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0975 ATGAGCTCCGAAGACAAATCTTCCATGGATTTGGTCCAACCTTCTGAGCATCTCTGTTATGTGAAATGCAACTTTTGCAACACAGTTCTTGCGGTTGGGATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGCAGTAATCTCTCCTTTTTGAGCACAAGACCCCCTTTACAAGGCCAATGCATTGATCATCCTCTCAATTTTCAGCCATCTCAGGTTGGCTTCTCCAATGAAATTCGAAAGGGCGCATCCACGTCGTCTTCATCGACATCGTCTTCCATGGCAAATGAGTCCCCCTCTGCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCCCATCGAGAAGCATTCAGTGCAGCAGCAAAGAACTGGGCAAGGTACATTCCAAATTCAGCTGGTGGGTCGGTTTCTGGGACTCACAACAATAGGGGATTTTCGTACGGATAA 537 45.44 MSSEDKSSMDLVQPSEHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLNFQPSQVGFSNEIRKGASTSSSSTSSSMANESPSANFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAGGSVSGTHNNRGFSYG 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8848483 8850406 - Tan0016725.1 Tan04g0975 749379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0975 178 CDD HMG-box_SF 118 154 - -
Tan04g0975 178 MobiDBLite consensus disorder prediction 85 105 - -
Tan04g0975 178 PANTHER PROTEIN YABBY 6-RELATED 14 170 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Tan04g0975 178 MobiDBLite consensus disorder prediction 85 115 - -
Tan04g0975 178 Gene3D High mobility group box domain 102 159 IPR036910 -
Tan04g0975 178 FunFam protein CRABS CLAW isoform X3 109 168 - -
Tan04g0975 178 Pfam YABBY protein 14 157 IPR006780 GO:0007275(InterPro)
Tan04g0975 178 SUPERFAMILY HMG-box 105 155 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0975 Tan-Chr4:8848483 Tan05g0067 Tan-Chr5:664647 6.40E-32 dispersed
Tan04g0975 Tan-Chr4:8848483 Tan08g0251 Tan-Chr8:2246320 6.40E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27212 PF04690 YABBY 8.10E-56 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0975 K25796 - csv:101219863 297.745