Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0975 ATGAGCTCCGAAGACAAATCTTCCATGGATTTGGTCCAACCTTCTGAGCATCTCTGTTATGTGAAATGCAACTTTTGCAACACAGTTCTTGCGGTTGGGATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGCAGTAATCTCTCCTTTTTGAGCACAAGACCCCCTTTACAAGGCCAATGCATTGATCATCCTCTCAATTTTCAGCCATCTCAGGTTGGCTTCTCCAATGAAATTCGAAAGGGCGCATCCACGTCGTCTTCATCGACATCGTCTTCCATGGCAAATGAGTCCCCCTCTGCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCCCATCGAGAAGCATTCAGTGCAGCAGCAAAGAACTGGGCAAGGTACATTCCAAATTCAGCTGGTGGGTCGGTTTCTGGGACTCACAACAATAGGGGATTTTCGTACGGATAA 537 45.44 MSSEDKSSMDLVQPSEHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLNFQPSQVGFSNEIRKGASTSSSSTSSSMANESPSANFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAGGSVSGTHNNRGFSYG 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8848483 8850406 - Tan0016725.1 Tan04g0975 749379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0975 178 CDD HMG-box_SF 118 154 - -
Tan04g0975 178 MobiDBLite consensus disorder prediction 85 105 - -
Tan04g0975 178 PANTHER PROTEIN YABBY 6-RELATED 14 170 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Tan04g0975 178 MobiDBLite consensus disorder prediction 85 115 - -
Tan04g0975 178 Gene3D High mobility group box domain 102 159 IPR036910 -
Tan04g0975 178 FunFam protein CRABS CLAW isoform X3 109 168 - -
Tan04g0975 178 Pfam YABBY protein 14 157 IPR006780 GO:0007275(InterPro)
Tan04g0975 178 SUPERFAMILY HMG-box 105 155 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0975 K25796 - - csv:101219863 297.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0975 Tan-Chr4:8848483 Tan05g0067 Tan-Chr5:664647 6.40E-32 dispersed
Tan04g0975 Tan-Chr4:8848483 Tan08g0251 Tan-Chr8:2246320 6.40E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0975 . 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 53.3 4.7e-46 181.8
Tan07g1851 . 79 237 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 9.8e-43 170.6
Tan01g2003 . 66 218 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 4.5e-40 161.8
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT1G08465 69.0 1.7e-56 216.5
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT1G08465 68.0 4.7e-46 181.8
Tan07g1851 . 35 227 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 4.4e-44 175.3
Tan09g1419 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 1.1e-42 170.6
Tan01g2003 . 17 195 C2C2-YABBY Transcription Factor Family AT1G08465 51.6 4.6e-41 165.2
Tan07g1851 . 46 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.6 1.6e-50 196.8
Tan01g2003 . 27 216 C2C2-YABBY Transcription Factor Family AT4G00180 52.1 6.3e-47 184.9
Tan04g1253 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.0 8.5e-41 164.9
Tan09g1419 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 5.9e-64 241.1
Tan08g0251 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 62.5 3.3e-51 198.7
Tan07g1851 . 35 199 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 1.5e-43 173.3
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT2G26580 63.2 6.3e-42 167.9
Tan01g2003 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 51.2 6.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27212 PF04690 YABBY 8.10E-56 CL0114 Tan TF