Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0980 ATGGCTCTATGTGGGGATCATAAAGATAGAGAGTTGAGGATCCATGAAAGTTTGGAGGAACTTAGTACTGATTTAGCTGATTATGTTGCTGAATTATCGGAGGCATCAGTGAAAGAACGAGGGGTGTTTTCTATTGCGTTATCTGGTGGTTCTCTAATTAGCTTAATGGGAAAGCTCTGTGAAGCTCCTTACAACAAGACTGTCGACTGGGCCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCTGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTGTCCAAGGTGCCAATTATTCCCAGCCATGTACACTCGATCAATGATTCGGTGTCAGCTGAGGAGGCTGCCGATGAGTACAAGTTTGTCATTCGACAGTTAGTTAAATCCCGCATCGTAAGTGTGTCTGATGTTAGTGACAGTCCCAAGTTTGACCTCATACTTCTTGGAATGGGTTCTGACGGCCATGTTGCCTCATTATTCCCTGATCACTCGGTGCTCGAAGAGAAAGATGAATGGGTTACCTTCATTACTGATTCTCCGAAACCTCCTCCAGAGAGAATCACCTTCACATTGCCTGTGATCAACTCTGCATCCAATGTGGCAATTGTTGTGACAGGTGAAAACAAAGCAGAGACCGTACATTTGGCCATCGACGATGTAGGACCAGACTGCCCACTCCTACCTGCGAGGTTGGTACAGCCGAGGAAAGGAAAGTTGGCATGGTTTTTGGATAAATATGCTGCTTCGAAACTTGACAATTACCAATTTTCCGAGCAGGCTTAA 804 44.65 MALCGDHKDRELRIHESLEELSTDLADYVAELSEASVKERGVFSIALSGGSLISLMGKLCEAPYNKTVDWAKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIIPSHVHSINDSVSAEEAADEYKFVIRQLVKSRIVSVSDVSDSPKFDLILLGMGSDGHVASLFPDHSVLEEKDEWVTFITDSPKPPPERITFTLPVINSASNVAIVVTGENKAETVHLAIDDVGPDCPLLPARLVQPRKGKLAWFLDKYAASKLDNYQFSEQA 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8876993 8882042 - Tan0000292.5 Tan04g0980 749384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0980 267 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 261 IPR037171 -
Tan04g0980 267 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 248 IPR006148 GO:0005975(InterPro)
Tan04g0980 267 Coils Coil 18 38 - -
Tan04g0980 267 CDD 6PGL 19 250 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Tan04g0980 267 FunFam Probable 6-phosphogluconolactonase 7 259 - -
Tan04g0980 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 8 259 IPR039104 -
Tan04g0980 267 Gene3D - 8 261 - -
Tan04g0980 267 NCBIfam 6-phosphogluconolactonase 14 258 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0978 Tan-Chr4:8876993 Tan04g0980 Tan-Chr4:8876993 1.20E-151 dispersed
Tan04g0980 Tan-Chr4:8876993 Tan07g0524 Tan-Chr7:8917601 4.00E-78 dispersed
Tan04g0979 Tan-Chr4:8876993 Tan04g0980 Tan-Chr4:8876993 1.20E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0980 K01057 - csv:101210739 493.426