Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0983 ATGGATCCCCCACCCTCTTACCGCAGTCGCAGAACCACGAACAAATCTGAGCTCTACTCCACAGTTGTCATCCATTCCAATCCTGATTCCGACTCCGACAACAATCCTACCGATCGGAACCTTCAATGGCGACGAAGGCCGCCGAGCGAAGGTCAAGACCTGTACGCCACAATGGTCTACAAGGACGTTGATAAGGGTCGCGAGGACGAGGATGATGACGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCCAAGGATTTTGGTGGCGGAGCCCCAATTGACTACGAGGACGACGATGATTTTGGATTTGATCACGATACTGAAGACTTTGGTACTATGATCGTCAAGACGGAAAGGAATCGTCCTCGCAATCGCTCCGTGTCTTCATCAGTTTCGACAAAGCCTCGAAGTTCGGCGTTGCCATCCGTGAACTTTCAGACGGGGAGCCCGGGGACGAGAGCAGGCGGAAGAGATGATGGGGAAGAAGGCGATGAGAGCGAGGAAGAGGATGGTGATGGGTATTCGACATTTGTGGTGAGGTCCACGGCGAGGTCGCGGAACAGAGAATCTGTTAGTGGTACTATTGTTCGAAGGACCGGTGGTAGTCGTAGTGATACCAGAGATGGAGGTGGAGAACTTGAGGGGTCCACGTTGGGCAGAGCGGTGGCGAGTATGCAAGGGATGGGAGAGTTAGGGTTTGGGAAACAGAGGAAGGGGAATGGATCGCCGAAGAGTGAGGAAGGCGGTGGTCGGATGCGCAGTAAGGTATCTTCCAGTTCGATTCCTGAAAGCATCACCAGGGAAGATCCAAATTCCAAGTATGAATTGCTCAACGAGCTCGGAAAGGGGTCCTATGGGGCTGTTTATAAAGCAAGGGATATTAAGACCTCTGAGTTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATCGAGATGTTACAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACTGAGGAAGCACTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCACTCAATTTTCAAAGTACATAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAACGCAATACATTCATTGGCACTCCACATTGGATGGCTCCGGAAGTTATTCAGGAAAGTCGATATGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCTGCCGTGCATCCAATGAGGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGGTGTTCCACGATTTTGTTGCGAAGTGTCTGACAAAAGATACCCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCGTCAGCAATGTTGCCCAAGATTGAAAAGGCTAGGAAAATCAGGACTTTGATGGCTCAGCAAGCTCATAGTATTCCTCCAGATGCATCAGGAGATGGTACTATAATAGCTGGAAAGCTGAATCAAGATTATGGAGATACAGTTCCTTCAAGGCCTCAGAATATTGGACCTCAGGTAGCAAATGAAATGGCATCTGGTGGCACTTGGAGGAAGCAAGAGCAATTGGAACTTGTAGCCGAAGGTACTTTTGGCACTGTAATAGTACATGATGGAGATGAAAATGATAAGGTGGCCTCTCAACTGGACATTGGCAATGCTGAAACACCAACTGGTCCATCAAGCAATGAGAGCCTATCCGTTCGTGTAACTGGAGTCAAAACTGTTTATTCTAGTGTGGTGGATCGTACGGGAGGTATTGTAAATAATATTCTTGATGGAAAACCAGATCCCGCCATGCTTGCATCTTCACCTTCATTTTTGGGTATTCATGAGCTTAGCACATTGAGGAGTGAAACTGTCAGCCGGAAATCTTTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGATATATCCCCCATTGCTTTGCTATCTGACAATGTCCTTGGAAGCATGCAGCAAGATAATAGGGGTACTGTAGCAGTGGAAGCGCTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGCAGGGGACAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACCCTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCGACTCAAGAACAACAAACCATTCAAAATCTTTGCGATACACTTAGAACTATCCTTCGATTGTAG 2541 47.15 MDPPPSYRSRRTTNKSELYSTVVIHSNPDSDSDNNPTDRNLQWRRRPPSEGQDLYATMVYKDVDKGREDEDDDDSSLPPLLKRLPKDFGGGAPIDYEDDDDFGFDHDTEDFGTMIVKTERNRPRNRSVSSSVSTKPRSSALPSVNFQTGSPGTRAGGRDDGEEGDESEEEDGDGYSTFVVRSTARSRNRESVSGTIVRRTGGSRSDTRDGGGELEGSTLGRAVASMQGMGELGFGKQRKGNGSPKSEEGGGRMRSKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKDTRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIPPDASGDGTIIAGKLNQDYGDTVPSRPQNIGPQVANEMASGGTWRKQEQLELVAEGTFGTVIVHDGDENDKVASQLDIGNAETPTGPSSNESLSVRVTGVKTVYSSVVDRTGGIVNNILDGKPDPAMLASSPSFLGIHELSTLRSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGSMQQDNRGTVAVEALQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8894177 8905532 - Tan0000218.1 Tan04g0983 749387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0983 846 SMART serkin_6 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0983 846 MobiDBLite consensus disorder prediction 231 270 - -
Tan04g0983 846 MobiDBLite consensus disorder prediction 179 201 - -
Tan04g0983 846 CDD STKc_MAP4K3_like 274 529 - -
Tan04g0983 846 Gene3D Transferase(Phosphotransferase) domain 1 271 561 - -
Tan04g0983 846 MobiDBLite consensus disorder prediction 125 152 - -
Tan04g0983 846 FunFam serine/threonine-protein kinase dst1 isoform X1 272 561 - -
Tan04g0983 846 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524(InterPro)
Tan04g0983 846 MobiDBLite consensus disorder prediction 253 268 - -
Tan04g0983 846 FunFam Aurora kinase A 267 356 - -
Tan04g0983 846 SUPERFAMILY Protein kinase-like (PK-like) 272 530 IPR011009 -
Tan04g0983 846 ProSiteProfiles Protein kinase domain profile. 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0983 846 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 218 563 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Tan04g0983 846 Pfam Protein kinase domain 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g0983 846 MobiDBLite consensus disorder prediction 24 216 - -
Tan04g0983 846 MobiDBLite consensus disorder prediction 107 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0983 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4377 Tan-Chr1:108689719 Tan04g0983 Tan-Chr4:8894177 5.30E-66 dispersed
Tan04g0983 Tan-Chr4:8894177 Tan04g0985 Tan-Chr4:8894177 0.00E+00 dispersed
Tan04g0983 Tan-Chr4:8894177 Tan04g0984 Tan-Chr4:8894177 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4377 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.9 3.3e-225 778.9
Tan04g0983 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan04g0984 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan04g0985 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan04g0986 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.4e-66 251.1
Tan01g4377 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.1 1.4e-231 800.0
Tan04g0983 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0984 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0985 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0986 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.1e-66 252.3
Tan04g0983 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan04g0984 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan04g0985 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan04g0986 . 4 846 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 8.2e-244 840.9
Tan01g4377 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.3e-67 253.8
Tan11g0629 . 1 663 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.4e-249 859.8
Tan07g1361 . 6 622 MAP Kinase Kinase Kinase Kinase AT5G14720 55.9 3.1e-188 656.0
Tan11g0630 . 15 536 MAP Kinase Kinase Kinase Kinase AT5G14720 61.8 1.2e-174 610.9
Tan01g2286 . 7 705 MAP Kinase Kinase Kinase Kinase AT4G24100 65.9 3.2e-247 852.0
Tan01g2287 . 7 725 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 7.1e-247 850.9
Tan07g1361 . 6 354 MAP Kinase Kinase Kinase Kinase AT4G24100 64.2 9.9e-132 468.4
Tan01g2286 . 11 706 MAP Kinase Kinase Kinase Kinase AT4G10730 66.2 6.1e-248 854.4
Tan01g2287 . 11 726 MAP Kinase Kinase Kinase Kinase AT4G10730 64.7 9.8e-246 847.0
Tan07g1361 . 7 375 MAP Kinase Kinase Kinase Kinase AT4G10730 62.9 3.5e-134 476.5
Tan07g1361 . 7 351 MAP Kinase Kinase Kinase Kinase AT1G70430 69.3 9.0e-139 491.5
Tan04g2490 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 50.7 1.0e-129 461.5
Tan01g2286 . 5 398 MAP Kinase Kinase Kinase Kinase AT1G70430 55.2 1.4e-118 424.5
Tan01g2287 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.6 3.0e-118 423.3
Tan04g2490 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 59.8 5.7e-219 758.1
Tan07g1361 . 6 353 MAP Kinase Kinase Kinase Kinase AT1G79640 69.0 5.8e-147 518.8
Tan11g0629 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.5e-104 375.9
Tan07g1361 . 5 327 MAP Kinase Kinase Kinase Kinase AT1G23700 58.0 2.8e-98 356.7
Tan04g2490 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 6.1e-85 312.4
Tan01g2286 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 7.4e-75 278.9
Tan01g2287 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 7.4e-75 278.9
Tan11g0630 . 15 201 MAP Kinase Kinase Kinase Kinase AT1G23700 57.4 2.0e-51 201.1
Tan10g0722 . 32 507 MAP Kinase Kinase Kinase Kinase AT4G14480 57.6 3.9e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67443 PF00069 Pkinase 3.10E-67 CL0016 Tan PK