Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0992 ATGGGCGAAGCAAACGAAGCAGGAAGTAGAGGAATGGAGAAAGTTCCTCTGCAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACATCAAGCCCAAATTAGGGCTTTTAATGAAGAAGATGATGCAGAGGAGATTGAGCTCAATCTTGGGCTTTCACTTGGAGGTCGATTTGGGGTTGACAAAAACAATTCCAAGAAGCTTATTCGGTCATCGTCCATCGCCGGGACGATACCGGTTTTAAGGGACGACGAGGGCTCTACTCCGGCGACGGTATCGTACCCGGCGCTTATTCGGACATCGTCTCTTCCGCCGCAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTACAGACGTTGAGGCGAATGGAGGCGAAGAGGAGACGGTTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGATGGGGACTGGTGGTTGTTTTGAAGAAGAGAAGCGAGAAATTGAAGGTCTTACCATTACAGGATTGAATTTGAGAGAGAAAAGGCCTTGTTCGGGTATTTCAACGGTGGCGCCGCCGTTCGGGTTGCCTACATGGGCTGCAGCCACCCGACAGGCTCTTATTTGTGGAATTGTGGATGATGTTGCCAAAGGCAAAGGCTGTACGTCCGCCGTCGGCGGTGGCGGTGGCAGCGGACAGCCCGCTTCTCAGTGCTCCGCCGAATCGCAGGGCGGAAGCTCGTCGGGGATGTCGGAATTGGACAGCAAACACATTCAAGGATCAAACAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAACGAGGCAACCTAGAGGTTGCAGGTTCTTCAGGATCGAAGACGTGCGAGAACCCGCCTGACAGTTCCAAAGCAGAGACAAAAAACTCATCCAAGAAACCCGATTCGGGCGAGAACAAGGGAAGAGAAACGACGACGACGACGTCGATGGAAGACATGCCTTGTGTGTTCACAATAGGGGATGGACCTGAAGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGGAAAGGGGAGGAAGTGAGGATAATGTGTGTTTGCCATGGCAAATTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCACTAAGACATATAGTTGTCAATCCCAATTCTGGTCCTTTTTTGTGA 1170 50.43 MGEANEAGSRGMEKVPLQTEKYPTDLLQRFLCSNSHQAQIRAFNEEDDAEEIELNLGLSLGGRFGVDKNNSKKLIRSSSIAGTIPVLRDDEGSTPATVSYPALIRTSSLPPQTEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGMGTGGCFEEEKREIEGLTITGLNLREKRPCSGISTVAPPFGLPTWAAATRQALICGIVDDVAKGKGCTSAVGGGGGSGQPASQCSAESQGGSSSGMSELDSKHIQGSNSYGEARSSSQERGNLEVAGSSGSKTCENPPDSSKAETKNSSKKPDSGENKGRETTTTTSMEDMPCVFTIGDGPEGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPFL 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8942015 8945259 + Tan0010191.1 Tan04g0992 749396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0992 389 PANTHER AFP HOMOLOG 2 1 384 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Tan04g0992 389 Coils Coil 119 139 - -
Tan04g0992 389 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 103 139 IPR032310 -
Tan04g0992 389 MobiDBLite consensus disorder prediction 292 306 - -
Tan04g0992 389 Pfam Tify domain binding domain 348 381 IPR032308 -
Tan04g0992 389 Pfam Ethylene-responsive binding factor-associated repression 47 82 IPR012463 -
Tan04g0992 389 MobiDBLite consensus disorder prediction 218 327 - -
Tan04g0992 389 MobiDBLite consensus disorder prediction 223 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0992 Tan-Chr4:8942015 Tan05g2358 Tan-Chr5:74945465 1.50E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0992 - - - 0.0