Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g0995 ATGGAAATCCTTCAAACTGCTCACGAGAAGCTCTGTTTTCCCATGCAGAGTGGTAGTTTGATTCCCTTTTTAAGAGTGTTTGAAGAGAATTGTAGGATTGCTTTAGATGAGAGGTTGGATTTTATGAAACCAGACCTTAATGCGTGTAATGCAGCACTTGAGGGGTGTTGCCATGAGCTTGAATCTGTAACAGATGCCGAGGGAGTTGTTGAAACGATGTCGCTTTTGAATCTTCGGCCTGATGAAGTGAGTTTTGGTGCTCTTGCATATTTGTATGCATTGAAGGAGCTTGAACAGAAGATCATTGAGTTAGAAGGTTTGATGGGGAAATTTGGTTTTACGTCTAGAGGTCTCTTCTTAACTAATTTGGTAAGTGGATACGTCAGTTCGGGCAACTTTGCTGCTGTTTCAAAGACCTTGTTGCGCAGTTTGAAAGATGAATGTGGAGCACATGTAAGTTTTGGTGAAAAAACATATTTGGAAGTCGTTAAGGGCTTTGTTCAAAGTGGAAATTTGAAGGAATTGTCTGCATTGATTGTTGATGCTCAGAATTTAGAGTCTTCATCAGAAGTTGATGGATCGATTGGATTCAGTATCATTAATGCCTGTGTTAATATTGGATGGTTGGATAAAGCACACGGTATTCTGAATGAAATCAATGCCCAGGGAGTTTCTCTGGGACTTGGAGTCTATCTGCCAATATTGAAAGCTTACAGGAAAGAGCATCGAACAGCTGAAGCAACCCAATTAATAATAGATATTAGCAGTTCTGGGCTTCAATTGGATGCAGAGAGTTACGATGCTCTAATAGAGGCATCAATGTCGAGCCAAGATTTTCAGTCAGCTTTTGCTTTGTTCAGGAGTATGAGAGATACAAGAAAATCCGACACGAAGGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGACGAAGTTGTCGAGGATCCTCTTGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCTTTTTGCAAAGCTGGAAGGCTCGAGGATGCAAGGAGAACATTCCGTAGGATGAAATTTCTGCAGTTTGAACCGAACGAGCAGACCTTCTTGTCCCTAATTAATGGTTATGTATCTGCAGAGAGATATTTCTGTGTTCTGATGCTGTGGAACGAACTTAAGTGGAAGGTTACAGCAAATGGGGAGAAAGGTATCAAACTTGATAGCAACTTGGTTGACGCATTCTTGTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTTGTCGAAAAAACGAAGGATACGAAGATCTTCGTCGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAATTGAGGAGGAGGAACCACAGGAAAATGGAATCACTAATTGCTTTCAAGAACTGGGCTGGTCTGAGTGCATGA 1464 41.12 MEILQTAHEKLCFPMQSGSLIPFLRVFEENCRIALDERLDFMKPDLNACNAALEGCCHELESVTDAEGVVETMSLLNLRPDEVSFGALAYLYALKELEQKIIELEGLMGKFGFTSRGLFLTNLVSGYVSSGNFAAVSKTLLRSLKDECGAHVSFGEKTYLEVVKGFVQSGNLKELSALIVDAQNLESSSEVDGSIGFSIINACVNIGWLDKAHGILNEINAQGVSLGLGVYLPILKAYRKEHRTAEATQLIIDISSSGLQLDAESYDALIEASMSSQDFQSAFALFRSMRDTRKSDTKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTANGEKGIKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMESLIAFKNWAGLSA 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8958905 8961812 - Tan0018029.1 Tan04g0995 749399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g0995 487 Gene3D Tetratricopeptide repeat domain 191 292 IPR011990 GO:0005515(InterPro)
Tan04g0995 487 Gene3D Tetratricopeptide repeat domain 293 458 IPR011990 GO:0005515(InterPro)
Tan04g0995 487 NCBIfam pentatricopeptide repeat 337 369 IPR002885 -
Tan04g0995 487 Pfam Pentatricopeptide repeat domain 253 298 IPR002885 -
Tan04g0995 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Tan04g0995 487 Pfam PPR repeat 198 223 IPR002885 -
Tan04g0995 487 Pfam PPR repeat family 337 380 IPR002885 -
Tan04g0995 487 Gene3D Tetratricopeptide repeat domain 24 190 IPR011990 GO:0005515(InterPro)
Tan04g0995 487 PANTHER BNAC05G43320D PROTEIN 17 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0995 Tan-Chr4:8958905 Tan06g0988 Tan-Chr6:8730046 3.20E-57 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g0995 - - - 0.0