Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1024 ATGTCTTCCAAAGCTTTCGTCGTTTTTGTCCTCTGCATCTTTTCGTTTTCATCTTTTACTTTAACAGAGTTTGTTAAGGTTTCAGTGAAAGGAGTTACCACCATTGCTGAAACTGACAATAATTTCATATGTGCTACTTTAGATTGGTGGCCTTCAGACAAATGCGATTATAACCAATGCCCATGGGGAAAAGCTGGCCTTCTCAATTTGGATCTACAAAATGTGATCTTGTCTAAAGCAATCAAGGAGTTCAATCCTTTAAGAATTCGACTTGGTGGATCACTTCAAGATCAAATCATTTATAGAGTTGGAAACGCAGTGCAGAAGTGTCCTCAAATGAGGAAACAAGTTGATGGTTTGTTTGGATTTAGTAAAGGTTGCTTCCCTATGGAAAGATGGGATGAACTTAGCGATCTTTTCAACAAGACATCAGCTCGAATTATGTTTAGTTTGAATGCTTTAATTGGAAAAACACCAGCTAACGATGGAACTATCAATTGGATTGGTGATTGGGATCCTCGTAATGCTCGAGATTTCATCAGATACACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTTGGTAATGAGCTTTGTGGTGACGGAGTTTCTGCAAGGCTTGAGCCTGATCAATATGGCAAAGATCTGACTCTCATGAGACAAGTTGTTGAAGAAGTTTACACTGATCCAAACAACAGACCCAAAATTCTTAGCCTCTTTGGTTTTTTGACAAAGAATGGTTCAAAATTTTCCTCCAAAGCACTGACCCAAATGTTGTTGATGGAGTCACCCACCATATTTACAATCTTGGTGCAGGTAATTTTTTTTAGCTTTTTTTTCTTGATGGATTGGCAATGGGGTGTTGATCCAAATCTAATTTACAAAGTTCAAGACCCTTATTATTTGGACCAAATTGCTCAAACATTCAAGGATGCAGCGACAGTTTCAGAGAGCTTTGCGCCGTGGTCTAAGCCATGGGTTGGTGAATCTGGTGGCGCTTTTAATAGTGGTGGAAAAACTGTTTCTCACACATTTGCCAATGGCTTCTGGTATTTGGATCAATTGGGGATGACGGCCACATTCAACCATCACGTTTATTGCAGACAGGCCTTGGTTGGTGGAAATTATGCTTTGCTTAATACCACTACTTTCATCCCTAATCCTGATTACTATAGTGCTCTTCTATGGCACAGATTAATGGGAAAGAAGGTTCTCTCAGCCTCTCACAATAGTTCTCCATATCTTCGTGTCTATTCTCATTGCTCGAAAAACAACCAAGGCGTCACTGTTCTTCTAATCAACATGTCGAACTCGACCACATTCGATGTCAACATTGTGAGCGACAGAAACATTTATCCCAACTTTGTTGGTGGTCGATTACAACCAAGAGAAGAGTATCATTTGACTCCAAAAGATGGCAATATTCAAAGTGATGTTATGCTTTTGAATGGAGCCCCTCTCCAACTTACACCAACGTTGGACATTCCCGACATGCCACCCAAGCTCGTTGATCCCACTTCCGTTGTGTCAGTTGCCCCCGATTCTTTCGTGTTTGTCGCCATCAAAGACTTCAAAGCTTCTGCTTGCGTTTAG 1596 40.48 MSSKAFVVFVLCIFSFSSFTLTEFVKVSVKGVTTIAETDNNFICATLDWWPSDKCDYNQCPWGKAGLLNLDLQNVILSKAIKEFNPLRIRLGGSLQDQIIYRVGNAVQKCPQMRKQVDGLFGFSKGCFPMERWDELSDLFNKTSARIMFSLNALIGKTPANDGTINWIGDWDPRNARDFIRYTASKGYKIDSYELGNELCGDGVSARLEPDQYGKDLTLMRQVVEEVYTDPNNRPKILSLFGFLTKNGSKFSSKALTQMLLMESPTIFTILVQVIFFSFFFLMDWQWGVDPNLIYKVQDPYYLDQIAQTFKDAATVSESFAPWSKPWVGESGGAFNSGGKTVSHTFANGFWYLDQLGMTATFNHHVYCRQALVGGNYALLNTTTFIPNPDYYSALLWHRLMGKKVLSASHNSSPYLRVYSHCSKNNQGVTVLLINMSNSTTFDVNIVSDRNIYPNFVGGRLQPREEYHLTPKDGNIQSDVMLLNGAPLQLTPTLDIPDMPPKLVDPTSVVSVAPDSFVFVAIKDFKASACV 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9103686 9105982 + Tan0017520.1 Tan04g1024 749428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1024 531 Pfam Glycosyl hydrolase family 79, N-terminal domain 26 357 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
Tan04g1024 531 PANTHER HEPARANASE-RELATED 25 530 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Tan04g1024 531 FunFam heparanase-like protein 3 62 399 - -
Tan04g1024 531 SUPERFAMILY (Trans)glycosidases 38 401 IPR017853 -
Tan04g1024 531 Gene3D Glycosidases 64 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1024 Tan-Chr4:9103686 Tan04g1026 Tan-Chr4:9119232 8.00E-264 dispersed
Tan04g1024 Tan-Chr4:9103686 Tan04g1025 Tan-Chr4:9114847 2.60E-270 tandem
Tan01g2319 Tan-Chr1:27995580 Tan04g1024 Tan-Chr4:9103686 1.10E-270 transposed
Tan09g0754 Tan-Chr9:57732597 Tan04g1024 Tan-Chr4:9103686 1.70E-99 transposed
Tan04g1024 Tan-Chr4:9103686 Tan05g2388 Tan-Chr5:75226526 5.90E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1024 K07964 - csv:101214214 807.364