Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g1036 ATGGGTGACGATGAACATGAGCAGCCACCGTCGTCGGTGCCGCCGCCGTCGTCGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTCAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCCGGGCCCATGACTCTCGTCTCGAGCTTCTTTTCCGATTCAGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCGCCGGTGGCTGTTCCTACGCCGGCGTCTGAGCTCAAGGCCCCTGCCGGTCTGCTCGATTCTCCGGGGCTTTTTTCGCCTGGTCAGGGACCTTTTGGAATGACACATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCACAAGCCTATTCTCATAAGCAAATACAAGAAGAATCTTTTTCTTCATCACTAGAACGCTCTGCATCCTCCTCAAAGCTTTTGACAACCTTTCCGGGTGAGAAGTCTAAAGATCAGCCGGTGCCACTTCCATTGCTGAACTCTGCAGTTGCATCCAAGGAATCATCGGATATCTCTCAATCAGATCAGAGATTGCAATCTTCTTCGAGTAATGTTGATAGGCCTGCTGACGACGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAAGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCAAATTGTCCCGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGCCAAGTCACTGAAATTATCTACAAGGGTGAGCATAACCACGAACGACCTCAACCGAACAAGCGGGCAAAGGATGTTGGAAATTCTAACGGATATTCAAGTATTCATGGAAATCCTATGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACAGCTGTGTCTTCCATAGCAAAGAAGGATCAAGAATTGAGTCATGTTACACATGAACAGTTGTTGGGTATTAGTGATGGTGAGGGAGGGGGTGAGATAGAAACGGGAGTGAATCGAAAAGATGAAGACGAACCTGACGCCAAGAGACAGAATACTGAGGTTAGAGTTTCTGAGCCAGCATCTTCTCATAGGACGCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTGGATGATGGCTACAGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGAAACCCTTACCCCAGGAGCTATTATAAATGCACGACTCCGGGATGCAATGTCCGTAAACATGTTGAGAGAGCTTCGACAGACCAGAAAGCTGTCATAACGACGTATGAGGGTAAACACAATCATGATGTTCCAGCTGGTAAAATCAGCAGCCACAGTACAGTCAACAGTAACGTTCCTCAGCTAAAATCACAAAATATTGCTACTGAGAAAAAAGTTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCCGTTGGACTTCTACGGTTAAAGAAAGAACAGATAATATAG 1497 47.29 MGDDEHEQPPSSVPPPSSKSKAFPLRPTINLPPRTSMESLFSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAVPTPASELKAPAGLLDSPGLFSPGQGPFGMTHQQALAQVTMQAAQAYSHKQIQEESFSSSLERSASSSKLLTTFPGEKSKDQPVPLPLLNSAVASKESSDISQSDQRLQSSSSNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHERPQPNKRAKDVGNSNGYSSIHGNPMLSSQVQSGYLNKLNEQTAVSSIAKKDQELSHVTHEQLLGISDGEGGGEIETGVNRKDEDEPDAKRQNTEVRVSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRSYYKCTTPGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHSTVNSNVPQLKSQNIATEKKVSSNNTDPGNSRQQPVGLLRLKKEQII 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9248866 9253500 + Tan0006913.1 Tan04g1036 749440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g1036 498 SMART WRKY_cls 384 443 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 SMART WRKY_cls 204 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 MobiDBLite consensus disorder prediction 335 355 - -
Tan04g1036 498 MobiDBLite consensus disorder prediction 322 366 - -
Tan04g1036 498 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 137 468 IPR044810 GO:0003700(InterPro)
Tan04g1036 498 ProSiteProfiles WRKY domain profile. 205 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 SUPERFAMILY WRKY DNA-binding domain 376 444 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 MobiDBLite consensus disorder prediction 1 29 - -
Tan04g1036 498 Gene3D WRKY domain 369 445 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 Gene3D WRKY domain 188 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 FunFam WRKY transcription factor 192 264 - -
Tan04g1036 498 MobiDBLite consensus disorder prediction 177 203 - -
Tan04g1036 498 FunFam WRKY transcription factor 33 371 437 - -
Tan04g1036 498 MobiDBLite consensus disorder prediction 254 268 - -
Tan04g1036 498 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 Pfam WRKY DNA -binding domain 385 442 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 MobiDBLite consensus disorder prediction 254 294 - -
Tan04g1036 498 ProSiteProfiles WRKY domain profile. 379 444 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan04g1036 498 MobiDBLite consensus disorder prediction 153 215 - -
Tan04g1036 498 MobiDBLite consensus disorder prediction 269 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0456 Tan-Chr2:4293249 Tan04g1036 Tan-Chr4:9248866 2.00E-55 dispersed
Tan04g1036 Tan-Chr4:9248866 Tan04g1038 Tan-Chr4:9248866 1.10E-195 dispersed
Tan04g1036 Tan-Chr4:9248866 Tan04g1037 Tan-Chr4:9248866 1.60E-274 tandem
Tan08g1942 Tan-Chr8:71584308 Tan04g1036 Tan-Chr4:9248866 3.60E-56 transposed
Tan11g0469 Tan-Chr11:3856132 Tan04g1036 Tan-Chr4:9248866 7.00E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27214 PF03106 WRKY 3.30E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g1036 - - - 0.0